View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8649_low_12 (Length: 241)
Name: NF8649_low_12
Description: NF8649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8649_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 8817685 - 8817585
Alignment:
| Q |
122 |
ctagggtttgatggtaattgttgcataattcaaagtgatctactcttagagtcttaattactttgtgaaagcagtgtaatgtctttgcatttaaacttgc |
221 |
Q |
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| T |
8817685 |
ctagggcttgatggtaattgttgcataattcaaagtgatctactcttagagtcttaattactttgtgaaagcagtgtaatgtctttgcatttaaacttgc |
8817586 |
T |
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| Q |
222 |
t |
222 |
Q |
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| T |
8817585 |
t |
8817585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 8817806 - 8817726
Alignment:
| Q |
1 |
tattagagaggtgaaaccaaagagagttttactattttatgctatctgctgcatgcctaatgctagttttgagagtcacaa |
81 |
Q |
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| T |
8817806 |
tattagagaggtgaaaccaaagagagttttactattttatgctatctgctgcatgcctaatgctggttttgagagtcacaa |
8817726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 8620519 - 8620595
Alignment:
| Q |
1 |
tattagagaggtgaaaccaaagagagttttactattttatgctatctgctgcatgcctaatgctagttttgagagtc |
77 |
Q |
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| T |
8620519 |
tattagagaggtgaaaccaaagagagttttactattttatgctatctgctgcatgcttaatgctagttttgagagtc |
8620595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 8816786 - 8816721
Alignment:
| Q |
5 |
agagaggtgaaaccaaagagagttttactattttatgctatctgctgcatgcctaatgctagtttt |
70 |
Q |
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| T |
8816786 |
agagaggtgaaaccgtagagagttttactattttatgctatctgctgcatgcttaatgctagtttt |
8816721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 213
Target Start/End: Original strand, 8620640 - 8620729
Alignment:
| Q |
122 |
ctagggtttgatggtaattgttgcataattcaaagtgatctactcttagagtcttaattactttgtgaaagcagtgtaatgtctttgcattt |
213 |
Q |
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| T |
8620640 |
ctagggtttgatggtaattgttggataattcatagcgacctactcttagattcttaattactt--tgagagcagtgtaatgtgtttgcattt |
8620729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 213
Target Start/End: Complemental strand, 8816669 - 8816579
Alignment:
| Q |
122 |
ctagggtttgatggtaattgttgcataattcaaagtgatctactctt-agagtcttaattactttgtgaaagcagtgtaatgtctttgcattt |
213 |
Q |
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| T |
8816669 |
ctagggtttgatggtaattgttggataatttgaagcgacctactcttaagagtctgaattactt--tgagagcagtgtaatgtgtttgcattt |
8816579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 8420795 - 8420828
Alignment:
| Q |
23 |
agagttttactattttatgctatctgctgcatgc |
56 |
Q |
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| T |
8420795 |
agagttttactattttattctatctgctgcatgc |
8420828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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