View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8649_low_13 (Length: 240)
Name: NF8649_low_13
Description: NF8649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8649_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 48017315 - 48017083
Alignment:
| Q |
1 |
attcgttatcaattataatttcatatcacttagagataataattatatcatccttatgttggtctgcaagaactgagaatttcatgaaccagaaaccaaa |
100 |
Q |
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| T |
48017315 |
attcgttatcaattataatttcatatcacttagagataataattatatcatccttatgttggtctgcaagaactgagaatttgatgaaccagaaaccaaa |
48017216 |
T |
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| Q |
101 |
aaacaaataagtgatttcaatgaaacttgacatgtaaaatgtatttacaatactattttcatgcattgca---ttttgttcctttaaaatgtcaaattct |
197 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
48017215 |
aaacaaattagtgatttcaatgaaacttgacatgtaaaatgtatttacaatactattttcatgcattgcattgttttgttcctttaaaatgtcaaattct |
48017116 |
T |
|
| Q |
198 |
ttctgatttgaatgtcatgtttcttctgtgatg |
230 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
48017115 |
ttctgatttgaatgtcatgtttcttctgtgatg |
48017083 |
T |
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