View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8649_low_3 (Length: 345)
Name: NF8649_low_3
Description: NF8649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8649_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 42642730 - 42643064
Alignment:
| Q |
1 |
aaatatccccaaattggtttcaactatcataattgatggttttgtccgtttactttgttctttattgttttgaacttggttgttcttttctggtacatct |
100 |
Q |
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| T |
42642730 |
aaatatccctaaattggtttcgattatcataattggtggttttgtctgtttactttattctttattgttttgaatttggttgttcttttctgatacatct |
42642829 |
T |
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| Q |
101 |
tgtgttagaatgaacgagttttcgttaatatatctcattttagcttattnnnnnnnncaa-accatacacaaaatcaagaactacggcaaatttaattta |
199 |
Q |
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| T |
42642830 |
tgtgctagaatgaacgagttttcgttaatatatctcattttggcttattaaaaaaaaaaacaccataaacaaaatcaagaactacgacaaatttaattta |
42642929 |
T |
|
| Q |
200 |
gtgagggcaaccgaccccaatttgaaacaaattgattcacccatgtatgtgagtttgaccgttaaactctt------aagtgattgatgcatggcgctgg |
293 |
Q |
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| T |
42642930 |
gtgggggcaaccgaccccaatttgaaacaaattgattcacccatgtatgtgagtttgaccgttaaactcttaaaagcaagtgattgatgcatggcgttgg |
42643029 |
T |
|
| Q |
294 |
ctacaacgcgctagtaaaatatgtcatgtaccgtg |
328 |
Q |
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| T |
42643030 |
ctactacgcgcgagtaaaatatgtcatgtaccgtg |
42643064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 8202266 - 8202198
Alignment:
| Q |
73 |
aacttggttgttcttttctggtacatcttgtgttagaatgaacgagttttcgttaatatatctcatttt |
141 |
Q |
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||||||||||||||||||||||| ||||||| ||||| |||| ||||| |||||||||||||||||| |
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| T |
8202266 |
aacttggttgttcttttctggtatgtcttgtgctagaaagaacatgtttttgttaatatatctcatttt |
8202198 |
T |
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