View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8649_low_4 (Length: 329)
Name: NF8649_low_4
Description: NF8649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8649_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 38711545 - 38711251
Alignment:
| Q |
17 |
gatctgattcagtgttggaagtaaacaaacaagattatgattcatgcaacaccaagaatccaatccacgagagggacagtggacattcaacttttctatt |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38711545 |
gatccgattcagtgttggaagtaaacaaacaagattatgattcatgcaacaccaagaatccaatccacgagagggacagtggacattcaactttcctatt |
38711446 |
T |
|
| Q |
117 |
ggacaaatcaggtcccttttacttcatcagtggaaaagtttcaaattgtctaaagggcgaaaaattgcatcttgttgttttgtctccacaccatggcaaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38711445 |
ggacaaatcaggtcccttttacttcatcagtggaaaagtttcaaattgtctaaagggcgaaaagttgcatcttgttgttttgtctccacaccatggcaaa |
38711346 |
T |
|
| Q |
217 |
ggacatcaaggtccatcatcatcacctttcgttgcaccggtacactccccagcaacgtctccagcatggattgctccgacaccaagtgctactag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38711345 |
ggacatcaaggtccatcatcatcacctttcgttgcaccggtacactccccagcaacgtctccagcatggattgctccgacaccaagtgctactag |
38711251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 38720073 - 38719939
Alignment:
| Q |
17 |
gatctgattcagtgttggaagtaaacaaacaagattatgattcatgcaacaccaagaatccaatccacgagagggacagtggacattcaacttttctatt |
116 |
Q |
| |
|
|||| |||||||| |||| || ||||||||||| | |||||||||||||||||| |||||||| | || |||| |||| ||||||| ||| ||| |
|
|
| T |
38720073 |
gatccgattcagtattggtggttaacaaacaagactttgattcatgcaacaccaaaaatccaattcttaagttggacgatggagattcaacctttaaatt |
38719974 |
T |
|
| Q |
117 |
ggacaaatcaggtcccttttacttcatcagtggaa |
151 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||| |
|
|
| T |
38719973 |
tgacaagtcaggtccctttttcttcatcagtggaa |
38719939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 51319905 - 51320077
Alignment:
| Q |
37 |
gtaaacaaacaagattatgattcatgcaacaccaagaatccaatccacgagagggacagtggacattcaacttttctattggacaaatcaggtccctttt |
136 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| ||| || || |||||| | | ||||| |||| |||||| ||||||||||||||| |||| || || || |
|
|
| T |
51319905 |
gtaaacaaacaagactatgattcttgcaacatcaataacccgatccacaatatggacaatggagattcaagttttctattggacaagtcagatcactatt |
51320004 |
T |
|
| Q |
137 |
acttcatcagtggaaaagtttcaaattgtctaaagggcgaaaaattgcatcttgttgttttgtctccacacca |
209 |
Q |
| |
|
||||||| || ||||||| || ||||| |||| || ||||| || ||||||||||||||||||||||||| |
|
|
| T |
51320005 |
acttcattagcggaaaagatttgaattgcgtaaatggtgaaaagtttaatcttgttgttttgtctccacacca |
51320077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 42094924 - 42094793
Alignment:
| Q |
21 |
tgattcagtgttggaagtaaacaaacaagattatgattcatgcaacaccaagaatccaatccacgagagggacagtggacattcaacttttctattggac |
120 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||||||| || || || || ||| ||| ||||| ||||| | |||| ||||||| |
|
|
| T |
42094924 |
tgattcagtgttggttgtaaacaaacaagatcatgattcatgcaacaccaaaaacccgatttacaagatggaaggtggagattcagcctttcaattggac |
42094825 |
T |
|
| Q |
121 |
aaatcaggtcccttttacttcatcagtggaaa |
152 |
Q |
| |
|
|| |||||||||||||||||||| |||||||| |
|
|
| T |
42094824 |
aagtcaggtcccttttacttcattagtggaaa |
42094793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 39690776 - 39690645
Alignment:
| Q |
21 |
tgattcagtgttggaagtaaacaaacaagattatgattcatgcaacaccaagaatccaatccacgagagggacagtggacattcaacttttctattggac |
120 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||||||||||||| ||| |||||||||||| ||| | | |||| ||||||||| | || ||| |
|
|
| T |
39690776 |
tgattcagtattggtggtaaacaaacacgattatgattcatgcaacatcaaaaatccaatccacaagatgagcgatggagattcaacttataagtttgac |
39690677 |
T |
|
| Q |
121 |
aaatcaggtcccttttacttcatcagtggaaa |
152 |
Q |
| |
|
||| | ||| ||||||||||||||||||||| |
|
|
| T |
39690676 |
aaagtaagtctcttttacttcatcagtggaaa |
39690645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 39711017 - 39711150
Alignment:
| Q |
17 |
gatctgattcagtgttggaagtaaacaaacaagattatgattcatgcaacaccaagaatccaatccacgagagggacagtggacattcaacttttctatt |
116 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||| | |||||||||||| |||| ||||||| ||| || ||| |||| |||| | ||||||||| ||| |
|
|
| T |
39711017 |
gatctgattctgtgttggtggtaaacaaccaaaactatgattcatgcgacacaaagaatctgatctacaagatggacgatggagagtcaactttttcatt |
39711116 |
T |
|
| Q |
117 |
ggacaaatcaggtcccttttacttcatcagtgga |
150 |
Q |
| |
|
| | ||| ||||||||||||||||||| |||||| |
|
|
| T |
39711117 |
gaataaaacaggtcccttttacttcattagtgga |
39711150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 39704441 - 39704508
Alignment:
| Q |
17 |
gatctgattcagtgttggaagtaaacaaacaagattatgattcatgcaacaccaagaatccaatccac |
84 |
Q |
| |
|
|||| |||||||| |||| ||||||||||| ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
39704441 |
gatccgattcagtattggtggtaaacaaacacgattatgattcatgcaacatcaaaaatccaatccac |
39704508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 278
Target Start/End: Original strand, 39711213 - 39711272
Alignment:
| Q |
219 |
acatcaaggtccatcatcatcacctttcgttgcaccggtacactccccagcaacgtctcc |
278 |
Q |
| |
|
||||||||||||||||||||| || | |||||||||||| ||||||||||| ||||||| |
|
|
| T |
39711213 |
acatcaaggtccatcatcatctccgatggttgcaccggtatactccccagcaccgtctcc |
39711272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University