View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8649_low_9 (Length: 262)
Name: NF8649_low_9
Description: NF8649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8649_low_9 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 25793644 - 25793400
Alignment:
| Q |
1 |
ccagcaagataaacatctgcagcagaaagattcatacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaa |
100 |
Q |
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| T |
25793644 |
ccagcaagataaacatctgcagcagaaagattcatacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaa |
25793545 |
T |
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| Q |
101 |
aatttaagcattatactccctccgtatcatgattttgaaggactgcgagttactaaattttcggccgtttcaagaaactctataatannnnnnngttcct |
200 |
Q |
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| T |
25793544 |
aatttaagcattatactccctccatctcatgatttggaaggactgcaagttactaaattttcggccatttcaagaaactctttaatatttttttgttcct |
25793445 |
T |
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| Q |
201 |
agtggccagattatgtatgaaaaatgataaatttaccaattgctt |
245 |
Q |
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| T |
25793444 |
agtggtcagattatgtatgaaaaatgataaatttaccaattgctt |
25793400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10075219 - 10075174
Alignment:
| Q |
1 |
ccagcaagataaacatctgcagcagaaagattcatacattttattg |
46 |
Q |
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| T |
10075219 |
ccagcaagataaacatctgcagcagcaagattcatttattttattg |
10075174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 10136774 - 10136729
Alignment:
| Q |
1 |
ccagcaagataaacatctgcagcagaaagattcatacattttattg |
46 |
Q |
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| T |
10136774 |
ccagcaagataaacatctgcagcagcaagattcatttattttattg |
10136729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 85852 - 85807
Alignment:
| Q |
1 |
ccagcaagataaacatctgcagcagaaagattcatacattttattg |
46 |
Q |
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|||||||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
85852 |
ccagcaagataaacatttgcagcagcaagattcatttattttattg |
85807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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