View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8650_high_16 (Length: 244)

Name: NF8650_high_16
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8650_high_16
NF8650_high_16
[»] chr6 (20 HSPs)
chr6 (92-221)||(25512719-25512848)
chr6 (92-228)||(26144697-26144833)
chr6 (92-222)||(25484888-25485018)
chr6 (92-215)||(25546810-25546933)
chr6 (92-228)||(26057749-26057885)
chr6 (92-228)||(26077719-26077855)
chr6 (92-215)||(25581551-25581674)
chr6 (182-224)||(26979322-26979364)
chr6 (93-215)||(27602921-27603043)
chr6 (169-218)||(26825736-26825785)
chr6 (182-223)||(26850591-26850632)
chr6 (182-215)||(26961005-26961038)
chr6 (93-133)||(27216299-27216339)
chr6 (185-222)||(26625160-26625197)
chr6 (182-215)||(26648366-26648399)
chr6 (185-222)||(26731137-26731174)
chr6 (182-215)||(26754334-26754367)
chr6 (182-214)||(25075801-25075833)
chr6 (182-218)||(26938970-26939006)
chr6 (93-133)||(26960919-26960959)
[»] chr4 (6 HSPs)
chr4 (169-218)||(18687890-18687939)
chr4 (169-218)||(18729772-18729821)
chr4 (169-218)||(18653754-18653803)
chr4 (169-218)||(18722350-18722399)
chr4 (169-211)||(18697685-18697727)
chr4 (182-211)||(18677843-18677872)
[»] chr1 (3 HSPs)
chr1 (93-132)||(28125980-28126019)
chr1 (182-215)||(266571-266604)
chr1 (93-129)||(28131802-28131838)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 25512719 - 25512848
Alignment:
Q  92 attttgttaaaagggaactgggaatattgaaatgatatatttaaaatttgactcaacggcaagaaaaacagagtgggatggaatggcttgcaagaagatg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25512719 attttgttaaaagggaactgggaatattgaaatgatatatttaaaatctgactcaacggcaagaaaaacagagtgggatagaatggcttgcaagaagatg 25512818  T
Q  192 acaaatctcaaaacacttatcattaaagat 221  Q
    |||||||||||||||||||||||| |||||    
T  25512819 acaaatctcaaaacacttatcattgaagat 25512848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 26144697 - 26144833
Alignment:
Q  92 attttgttaaaagggaactgggaatattgaaatgatatatttaaaatttgactcaacggcaagaaaaacagagtgggatggaatggcttgcaagaagatg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26144697 attttgttaaaagggaactgggaatattgaaatgatatatttagaatttgactcaacggcaagagaaacagagtgggatggaatggcttgcaagaagatg 26144796  T
Q  192 acaaatctcaaaacacttatcattaaagatgataact 228  Q
    |||||||||||||||||||||||| || ||| |||||    
T  26144797 acaaatctcaaaacacttatcattgaatatgctaact 26144833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 92 - 222
Target Start/End: Original strand, 25484888 - 25485018
Alignment:
Q  92 attttgttaaaagggaactgggaatattgaaatgatatatttaaaatttgactcaacggcaagaaaaacagagtgggatggaatggcttgcaagaagatg 191  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  25484888 attttgttaaaagggaactgagaatattgaaatgatatatttaaaatttgacccaacggcaagagaaacagagtgggatggaatggcttgcaagaagatg 25484987  T
Q  192 acaaatctcaaaacacttatcattaaagatg 222  Q
    |||||||||||||||||||||||| ||||||    
T  25484988 acaaatctcaaaacacttatcattgaagatg 25485018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 25546810 - 25546933
Alignment:
Q  92 attttgttaaaagggaactgggaatattgaaatgatatatttaaaatttgactcaacggcaagaaaaacagagtgggatggaatggcttgcaagaagatg 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  25546810 attttgttaaaagggaactgggaatattgaaatgatatatttaaaatatgactcaacggcaagagaaacagagtgggatagaatggcttgcaagaagatg 25546909  T
Q  192 acaaatctcaaaacacttatcatt 215  Q
    ||||||||||||||||||||||||    
T  25546910 acaaatctcaaaacacttatcatt 25546933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 26057749 - 26057885
Alignment:
Q  92 attttgttaaaagggaactgggaatattgaaatgatatatttaaaatttgactcaacggcaagaaaaacagagtgggatggaatggcttgcaagaagatg 191  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| || ||  ||||||||| |||||||||||||||||||||||||| ||||||||    
T  26057749 attttgttaaaagggaactgggaatattgaaatgatatatctcaaatatgccttcacggcaagagaaacagagtgggatggaatggcttgcgagaagatg 26057848  T
Q  192 acaaatctcaaaacacttatcattaaagatgataact 228  Q
    ||||||||||||||||||||||||||||||| |||||    
T  26057849 acaaatctcaaaacacttatcattaaagatggtaact 26057885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 92 - 228
Target Start/End: Original strand, 26077719 - 26077855
Alignment:
Q  92 attttgttaaaagggaactgggaatattgaaatgatatatttaaaatttgactcaacggcaagaaaaacagagtgggatggaatggcttgcaagaagatg 191  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| || ||  ||||||||| |||||||||||||||||||||||||| ||||||||    
T  26077719 attttgttaaaagggaactgggaatattgaaatgatatatctcaaatatgccttcacggcaagagaaacagagtgggatggaatggcttgcgagaagatg 26077818  T
Q  192 acaaatctcaaaacacttatcattaaagatgataact 228  Q
    ||||||||||||||||||||||||||||||| |||||    
T  26077819 acaaatctcaaaacacttatcattaaagatggtaact 26077855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 25581551 - 25581674
Alignment:
Q  92 attttgttaaaagggaactgggaatattgaaatgatatatttaaaatttgactcaacggcaagaaaaacagagtgggatggaatggcttgcaagaagatg 191  Q
    |||||||||||||||||||| ||||||||||||||||||| | |||| || || |||||||||| |||||||||||||||||||||||| ||| ||||||    
T  25581551 attttgttaaaagggaactgagaatattgaaatgatatatctcaaatatggcttaacggcaagagaaacagagtgggatggaatggctttcaataagatg 25581650  T
Q  192 acaaatctcaaaacacttatcatt 215  Q
    ||||||||||||||||||||||||    
T  25581651 acaaatctcaaaacacttatcatt 25581674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 224
Target Start/End: Original strand, 26979322 - 26979364
Alignment:
Q  182 caagaagatgacaaatctcaaaacacttatcattaaagatgat 224  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  26979322 caagaagatgacaaatctcaaaacacttatcattcaagctgat 26979364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 215
Target Start/End: Complemental strand, 27603043 - 27602921
Alignment:
Q  93 ttttgttaaaagggaactgggaatattgaaatgatatatttaaaatttgactcaacggcaagaaaaacagagtgggatggaatggcttgcaagaagatga 192  Q
    |||| ||||||||||||| |||| |||||||||||| |||| || | |  ||||| || ||    || ||||||| |||||| |||    ||||||||||    
T  27603043 ttttcttaaaagggaactaggaacattgaaatgatacatttgaattgtccctcaatggaaaacgtaatagagtggaatggaaaggccatgaagaagatga 27602944  T
Q  193 caaatctcaaaacacttatcatt 215  Q
    |||||||||||||||||||||||    
T  27602943 caaatctcaaaacacttatcatt 27602921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Original strand, 26825736 - 26825785
Alignment:
Q  169 atggaatggcttgcaagaagatgacaaatctcaaaacacttatcattaaa 218  Q
    |||||| ||||| || ||||||||||||||||||||||||||| ||||||    
T  26825736 atggaaaggctttcatgaagatgacaaatctcaaaacacttattattaaa 26825785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 26850591 - 26850632
Alignment:
Q  182 caagaagatgacaaatctcaaaacacttatcattaaagatga 223  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  26850591 caagaagatgacaaatctcaaaacacttatcgttgaagatga 26850632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 26961005 - 26961038
Alignment:
Q  182 caagaagatgacaaatctcaaaacacttatcatt 215  Q
    ||||||||||||||||||||||||||||||||||    
T  26961005 caagaagatgacaaatctcaaaacacttatcatt 26961038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 27216299 - 27216339
Alignment:
Q  93 ttttgttaaaagggaactgggaatattgaaatgatatattt 133  Q
    |||||||||||||||||| |||| |||||||||||||||||    
T  27216299 ttttgttaaaagggaacttggaaaattgaaatgatatattt 27216339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 26625160 - 26625197
Alignment:
Q  185 gaagatgacaaatctcaaaacacttatcattaaagatg 222  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  26625160 gaagatgacaaaactcaaaacacttatcattgaagatg 26625197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 26648366 - 26648399
Alignment:
Q  182 caagaagatgacaaatctcaaaacacttatcatt 215  Q
    ||||||||||||||| ||||||||||||||||||    
T  26648366 caagaagatgacaaaactcaaaacacttatcatt 26648399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 222
Target Start/End: Original strand, 26731137 - 26731174
Alignment:
Q  185 gaagatgacaaatctcaaaacacttatcattaaagatg 222  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  26731137 gaagatgacaaaactcaaaacacttatcattgaagatg 26731174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 26754334 - 26754367
Alignment:
Q  182 caagaagatgacaaatctcaaaacacttatcatt 215  Q
    ||||||||||||||| ||||||||||||||||||    
T  26754334 caagaagatgacaaaactcaaaacacttatcatt 26754367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 214
Target Start/End: Original strand, 25075801 - 25075833
Alignment:
Q  182 caagaagatgacaaatctcaaaacacttatcat 214  Q
    |||||||||||||||| ||||||||||||||||    
T  25075801 caagaagatgacaaatatcaaaacacttatcat 25075833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 218
Target Start/End: Original strand, 26938970 - 26939006
Alignment:
Q  182 caagaagatgacaaatctcaaaacacttatcattaaa 218  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  26938970 caagaagatgaaaaatcttaaaacacttatcattaaa 26939006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 133
Target Start/End: Original strand, 26960919 - 26960959
Alignment:
Q  93 ttttgttaaaagggaactgggaatattgaaatgatatattt 133  Q
    |||||||||||||||||| | || |||||||||||||||||    
T  26960919 ttttgttaaaagggaactagtaaaattgaaatgatatattt 26960959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 18687939 - 18687890
Alignment:
Q  169 atggaatggcttgcaagaagatgacaaatctcaaaacacttatcattaaa 218  Q
    |||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  18687939 atggaaaggctttcaagaagatgacaaatctcaaaacacttattattaaa 18687890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 18729821 - 18729772
Alignment:
Q  169 atggaatggcttgcaagaagatgacaaatctcaaaacacttatcattaaa 218  Q
    |||||| ||||| |||||||||||||||||||||||||||||| ||||||    
T  18729821 atggaaaggctttcaagaagatgacaaatctcaaaacacttattattaaa 18729772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 18653803 - 18653754
Alignment:
Q  169 atggaatggcttgcaagaagatgacaaatctcaaaacacttatcattaaa 218  Q
    |||||| ||| | |||||||||||||||||||||||||||||| ||||||    
T  18653803 atggaaaggccttcaagaagatgacaaatctcaaaacacttattattaaa 18653754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 18722399 - 18722350
Alignment:
Q  169 atggaatggcttgcaagaagatgacaaatctcaaaacacttatcattaaa 218  Q
    |||||| ||| | |||||||||||||||||||||||||||||| ||||||    
T  18722399 atggaaaggccttcaagaagatgacaaatctcaaaacacttattattaaa 18722350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 18697727 - 18697685
Alignment:
Q  169 atggaatggcttgcaagaagatgacaaatctcaaaacacttat 211  Q
    |||||| ||| | ||||||||||||||||||||||||||||||    
T  18697727 atggaaaggccttcaagaagatgacaaatctcaaaacacttat 18697685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 211
Target Start/End: Complemental strand, 18677872 - 18677843
Alignment:
Q  182 caagaagatgacaaatctcaaaacacttat 211  Q
    ||||||||||||||||||||||||||||||    
T  18677872 caagaagatgacaaatctcaaaacacttat 18677843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 28126019 - 28125980
Alignment:
Q  93 ttttgttaaaagggaactgggaatattgaaatgatatatt 132  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  28126019 ttttgttaaaagggaactggtaacattgaaatgatatatt 28125980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 266604 - 266571
Alignment:
Q  182 caagaagatgacaaatctcaaaacacttatcatt 215  Q
    |||||||||||||||||||||||||||| |||||    
T  266604 caagaagatgacaaatctcaaaacacttgtcatt 266571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 28131838 - 28131802
Alignment:
Q  93 ttttgttaaaagggaactgggaatattgaaatgatat 129  Q
    |||||||||||||||||||| || |||||||||||||    
T  28131838 ttttgttaaaagggaactggaaaaattgaaatgatat 28131802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University