View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_high_17 (Length: 242)
Name: NF8650_high_17
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2350949 - 2351172
Alignment:
| Q |
1 |
caaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2350949 |
caaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcgtgatggaaatggagagaaggtggaagtgaaaga |
2351048 |
T |
|
| Q |
101 |
ggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
2351049 |
ggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttgccacacgcggtgacagag |
2351148 |
T |
|
| Q |
201 |
gatgtgctttttaatggttatttg |
224 |
Q |
| |
|
|||||||||||||| ||||||||| |
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|
| T |
2351149 |
gatgtgctttttaacggttatttg |
2351172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 2303375 - 2303596
Alignment:
| Q |
3 |
aatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagagg |
102 |
Q |
| |
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|||||||| |||||||| || ||||| ||||||||||||| |||||| |||||||||||||| ||||| ||||||||||||| |||||||||||||| |
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| T |
2303375 |
aatttggttaagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtggtgatgagaatggagagaaggaggaagtgaaagagg |
2303474 |
T |
|
| Q |
103 |
aagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagagga |
202 |
Q |
| |
|
|||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||| |
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| T |
2303475 |
aagaattgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatccaccggggcattttctgttgccacacgcggtgaaagagga |
2303574 |
T |
|
| Q |
203 |
tgtgctttttaatggttatttg |
224 |
Q |
| |
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|||| |||| || ||||||||| |
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| T |
2303575 |
tgtggttttgaacggttatttg |
2303596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 2293768 - 2293983
Alignment:
| Q |
9 |
gtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagaggaagatt |
108 |
Q |
| |
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||||||||||| || ||||| |||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||| | |
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| T |
2293768 |
gtgaagtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaagact |
2293867 |
T |
|
| Q |
109 |
tgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagaggatgtgct |
208 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| | | ||| ||||||||||||| |||||||||| | |
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| T |
2293868 |
tgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccggggaaatttccgttgccacacgcggtgaaagaggatgtggt |
2293967 |
T |
|
| Q |
209 |
ttttaatggttatttg |
224 |
Q |
| |
|
||| | ||||||||| |
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|
| T |
2293968 |
tttggacggttatttg |
2293983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 2310097 - 2310314
Alignment:
| Q |
7 |
tggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagaggaaga |
106 |
Q |
| |
|
||||||||||||| || ||| | |||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |
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|
| T |
2310097 |
tggtgaagtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaaga |
2310196 |
T |
|
| Q |
107 |
tttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagaggatgtg |
206 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||| | | ||| ||||||||||||| |||||||||| |
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|
| T |
2310197 |
cttgcagaaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatccatcggggaaatttccgttgccacacgcggtgaaagaggatgtg |
2310296 |
T |
|
| Q |
207 |
ctttttaatggttatttg |
224 |
Q |
| |
|
|||| | ||||||||| |
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|
| T |
2310297 |
gttttggacggttatttg |
2310314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 2321076 - 2321298
Alignment:
| Q |
3 |
aatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagagg |
102 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||||||||| |||||| | |||||||||| | ||||| ||||||||||||| |||||||||||||| |
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|
| T |
2321076 |
aatttggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggttagtgatgacaatggagagaaggaggaagtgaaagagg |
2321175 |
T |
|
| Q |
103 |
aagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc-ggggcataatgtgttaccacacgcggtgacagagg |
201 |
Q |
| |
|
|| | |||||||||||| ||| |||| || ||||||||||||||| |||||||||||||||| ||||||| |||||| ||||| |||||| ||||| |
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|
| T |
2321176 |
aaaacttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatccaccaggggcattttgtgttggcacacacggtgaaagagg |
2321275 |
T |
|
| Q |
202 |
atgtgctttttaatggttatttg |
224 |
Q |
| |
|
||||| |||| || ||||||||| |
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| T |
2321276 |
atgtggttttgaacggttatttg |
2321298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 2326930 - 2327151
Alignment:
| Q |
3 |
aatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagagg |
102 |
Q |
| |
|
||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| | |||||| |||||| || |||||||| |||||||||||||| |
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|
| T |
2326930 |
aatttggtgaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggtggtgatggtgttgtagagaaggaggaagtgaaagagg |
2327029 |
T |
|
| Q |
103 |
aagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagagga |
202 |
Q |
| |
|
|||| ||||| |||||| |||| |||| ||||||||||||||||||||||||||||||||||| |||||| |||||| || || || |||| || || |
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| T |
2327030 |
aagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccagggcattttgtgttgcctcatgcagtgagcgatga |
2327129 |
T |
|
| Q |
203 |
tgtgctttttaatggttatttg |
224 |
Q |
| |
|
|||| |||| |||||||||||| |
|
|
| T |
2327130 |
tgtggttttgaatggttatttg |
2327151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 2330645 - 2330866
Alignment:
| Q |
3 |
aatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagagg |
102 |
Q |
| |
|
||||||||||||||||| ||||| || |||| ||||||||| ||||||| |||||||||||| |||| ||||||||||| |||||||||||||| |
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|
| T |
2330645 |
aatttggtgaagtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtggcgatgatgctggagagaaggaggaagtgaaagagg |
2330744 |
T |
|
| Q |
103 |
aagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagagga |
202 |
Q |
| |
|
|||| ||||| |||||| |||| |||| || |||||||||||||||||||||||||||||||| |||||| ||||| || ||||| |||| ||||| |
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|
| T |
2330745 |
aagacttgcataaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcatttcgtgttgcctcacgcagtgagcgagga |
2330844 |
T |
|
| Q |
203 |
tgtgctttttaatggttatttg |
224 |
Q |
| |
|
|||| |||| |||||||||||| |
|
|
| T |
2330845 |
tgtggttttgaatggttatttg |
2330866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 41127050 - 41127165
Alignment:
| Q |
96 |
aaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtga |
195 |
Q |
| |
|
||||||||||| |||||||| || ||||| || |||||| ||||||||||| ||||| |||| ||||||||||| |||||| || || ||||||| |
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|
| T |
41127050 |
aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggcactttgtgttgccccatgcggtga |
41127149 |
T |
|
| Q |
196 |
cagaggatgtgctttt |
211 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
41127150 |
aggaggatgtggtttt |
41127165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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