View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_high_3 (Length: 501)
Name: NF8650_high_3
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_high_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 501
Target Start/End: Original strand, 49653970 - 49654454
Alignment:
| Q |
17 |
ttcgtgtttctgtatgtgattcttattaattaaccatttttgtgttgttacggtgacaaaattttggggtgtttcataacatttgcaatgcaggagtttt |
116 |
Q |
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| T |
49653970 |
ttcgtgtttctgtatttgattcttattaattaaccatttttgtgttgttacggtgacaaaattttggggtgtttcataacatttgcaatgcaggagtttt |
49654069 |
T |
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| Q |
117 |
tacaacaacaatcgatccacaacagaataaagtaacagtcaccggaaatgttgctctcgagactctgataaggaaacttgccaaagctggaaaacacgcc |
216 |
Q |
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| T |
49654070 |
tacaacaacaatcgatccacaacagaataaagtaacagtcaccggaaatgttgctctcgagactctgataaggaaacttgccaaagctggaaaacacgcc |
49654169 |
T |
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| Q |
217 |
gaggttttgccggagaatcttccagggaaagtaaaggactccaacaaagctaaaaacaacaataagagtgaacnnnnnnnccaagaaactcagcaaaaga |
316 |
Q |
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| T |
49654170 |
gaggttttgccggagaatcttccagggaaagtaaaggactccaacaaagctaaaaacaacaataagagtgaacaaaaaaaccaagaaactcagcaaaaga |
49654269 |
T |
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| Q |
317 |
aagaccattgttctgcaaatactgaatccaacctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaa |
416 |
Q |
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| T |
49654270 |
aagaccattgttctgcaaatactgaatccaacctcaactctgccaaagacaagggaattgaaaatgctgagaagtgtaacggtaaaagcaagagtactaa |
49654369 |
T |
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| Q |
417 |
cacaaaaaccagtgctggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaggagtggtcaaagtggc |
501 |
Q |
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| T |
49654370 |
cacaaaaaccagtgctggctcaccggagaaatctccggctggtggtaaggggcaggaaacaaagaacaagagtggtcaaagtggc |
49654454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 6224678 - 6224763
Alignment:
| Q |
165 |
tgttgctctcgagactctgataaggaaacttgccaaagctggaaaacacgccgaggttttgccggagaatcttccagggaaagtaa |
250 |
Q |
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| T |
6224678 |
tgttgctcttgagactttgataaggaaacttgccaaagctggaaatcacgccgaggttttgccagagaatcttcctgggaaagtaa |
6224763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 237
Target Start/End: Complemental strand, 14381964 - 14381849
Alignment:
| Q |
122 |
caacaatcgatccacaacagaataaagtaacagtcaccggaaatgttgctctcgagactctgataaggaaacttgccaaagctggaaaacacgccgaggt |
221 |
Q |
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| T |
14381964 |
caacaattgattcacaacaacaaaaagtaacagtaactggaaatgttggtgttgagacccttttaaggaagctggtcaaagctggaaagtacgctgagat |
14381865 |
T |
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| Q |
222 |
tttgccggagaatctt |
237 |
Q |
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| T |
14381864 |
ttggccggagaatctt |
14381849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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