View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_10 (Length: 438)
Name: NF8650_low_10
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 3 - 420
Target Start/End: Original strand, 11442344 - 11442761
Alignment:
| Q |
3 |
actcaataatgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11442344 |
actcaataatgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggat |
11442443 |
T |
|
| Q |
103 |
ttgactaaagttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaaccccgtcatgtggatgagaaaaaatgaaggata |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
11442444 |
ttgactaaagttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaaccccgtcatgaggatgagaaaaaatgaagcata |
11442543 |
T |
|
| Q |
203 |
caacgtcgagaaaagggtcggtcggaaggctcctaggagagtgtatactattgtaaattccggtttttggtgaataccaagaagggtgagtgatggtatt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11442544 |
caacgtcgagaaaagggtcggtcggaaggctcctaggagagtgtatactattgtaaattccggtttttggtgaataccaagaagggtgagtgatggtatt |
11442643 |
T |
|
| Q |
303 |
ttgtggcatgtcacagttgaaatttgctgccattgattttcagaaaaatgaatggtactggaaaattttaaatacagttatagttatgattgagtgtgtg |
402 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11442644 |
ttgtggcatgtcacagttgaaatttgcagccattgattttcagaaaagtgaatggtactggaaaattacaaatacagttatagttatgattgagtgtgtg |
11442743 |
T |
|
| Q |
403 |
aaatatgaatgctcttat |
420 |
Q |
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| T |
11442744 |
aaatatgaatgctcttat |
11442761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 3 - 296
Target Start/End: Original strand, 11452917 - 11453210
Alignment:
| Q |
3 |
actcaataatgcaataggatagtaaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggat |
102 |
Q |
| |
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|||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11452917 |
actcaatagtacaataggatagtaaattgaatttggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggat |
11453016 |
T |
|
| Q |
103 |
ttgactaaagttaacaaatttgagtaagaaatggaagtcccagataaggaatcaataagggctaaaaccccgtcatgtggatgagaaaaaatgaaggata |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||| | |
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| T |
11453017 |
ttgactaaagttaacaaatttgagtaagaaatggaagtcccagatgaggaatcaataagggctaaaaccccgtcatgagggtgagaaaaaatgaaggaaa |
11453116 |
T |
|
| Q |
203 |
caacgtcgagaaaagggtcggtcggaaggctcctaggagagtgtatactattgtaaattccggtttttggtgaataccaagaagggtgagtgat |
296 |
Q |
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|||| |||||||||||||| || |||||| |||||||||| |||| ||| |||||||||| | |||||||||||||||| ||||| |||||| |
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| T |
11453117 |
caacatcgagaaaagggtctgttggaaggttcctaggagactgtaaactgctgtaaattccaggttttggtgaataccaatgagggtaagtgat |
11453210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 25 - 282
Target Start/End: Complemental strand, 29911879 - 29911621
Alignment:
| Q |
25 |
taaattgaattgggaagtaaaagcaaaacaacatcaccttgtgaaacacccattttatgaagaccagaagccaaggatttgactaaagttaacaaatttg |
124 |
Q |
| |
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||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || | | ||||||||| |||||||||||||| |||||| |||| |
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| T |
29911879 |
taaattgaatttggaagtagaagcaaaacaacatcaccttgtgaaacacccattttgtgtaaagcagaagccatggatttgactaaaggtaacaactttg |
29911780 |
T |
|
| Q |
125 |
agtaagaaatggaagtcccagataaggaatcaataagggctaaaa-ccccgtcatgtggatgagaaaaaatgaaggatacaacgtcgagaaaagggtcgg |
223 |
Q |
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||||||||||||||| ||||||| | ||||||||||||||||||| |||| ||||| | || |||||||||||||| |||| ||| ||||||||||| | |
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| T |
29911779 |
agtaagaaatggaagacccagatgaagaatcaataagggctaaaacccccatcatgagagtgtgaaaaaatgaaggaaacaatgtcaagaaaagggtcag |
29911680 |
T |
|
| Q |
224 |
tcggaaggctcctaggagagtgtatactattgtaaattccggtttttggtgaataccaa |
282 |
Q |
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| ||||| | ||||||| |||||||| ||||||||||| ||||||| |||||||||| |
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| T |
29911679 |
ttggaagatttctaggagtatgtatactgttgtaaattccagtttttgatgaataccaa |
29911621 |
T |
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