View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_12 (Length: 405)
Name: NF8650_low_12
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Original strand, 23749709 - 23750090
Alignment:
| Q |
14 |
atggtgtttggaattgagcttgaaagttgatcatgagagaaatccaaagattcaagtaacttcatgtctcctatggttgtaggaatttcccctgacagat |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
23749709 |
atggtgtttggaatcgagcttgaaagttgatcatgagagaaatccaaagattcaagtaacttcatgtctcctatggttgtaggaatttcccctgacaaat |
23749808 |
T |
|
| Q |
114 |
tattatgtgacagatttaggcctcgtaaagcagtaagaagagttatttctttaggaataggtccactcaaattgttgtttgataaatccaaattggccac |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23749809 |
gattatgtgacagatttaggcctcgtaaagcagtaagaagagttatttcttttggaataggtccactcaaattgttgtttgataaatccaaattggccac |
23749908 |
T |
|
| Q |
214 |
aaatttcagatttcttgtatagtgatcttctcttcctttaatgacctggctgacatcttgttcataccattcaatatacttcggctcaccaggagctaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23749909 |
aaatttcagatttcttgtatagtgatcttctcttcctttaatgacctggctgacatcttgttcataccattcaatatacttcggctcaccaggagctaag |
23750008 |
T |
|
| Q |
314 |
taaacggatggtttacttccttgaaccattgctgttagatttccaatgcattgagggattgaccccatcaacatgttgttag |
395 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23750009 |
taaacggatggtttacttccttgaaccattgctattagatttccaatgcattgagggattgaccccatcaacatgttgttag |
23750090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 14 - 395
Target Start/End: Original strand, 23850410 - 23850791
Alignment:
| Q |
14 |
atggtgtttggaattgagcttgaaagttgatcatgagagaaatccaaagattcaagtaacttcatgtctcctatggttgtaggaatttcccctgacagat |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| || |
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| T |
23850410 |
atggtgtttggaattgagcttgaaagttgatcatgagagaaatccaaagattcaagtgacttcatgtcccctatggttgtaggaatttcccctgacaaat |
23850509 |
T |
|
| Q |
114 |
tattatgtgacagatttaggcctcgtaaagcagtaagaagagttatttctttaggaataggtccactcaaattgttgtttgataaatccaaattggccac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23850510 |
gattatgtgacagatttaggcctcgtaaagcagtaagaagagttatttctttaggaataggtccactcaaattgttgtttgataaatccaaattggccac |
23850609 |
T |
|
| Q |
214 |
aaatttcagatttcttgtatagtgatcttctcttcctttaatgacctggctgacatcttgttcataccattcaatatacttcggctcaccaggagctaag |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23850610 |
aaatttcagatttcttgtatagtgatcttctcttcctttaatgacctggctgacatcttgttcataccattcaatatacttcggctcaccaggagctaag |
23850709 |
T |
|
| Q |
314 |
taaacggatggtttacttccttgaaccattgctgttagatttccaatgcattgagggattgaccccatcaacatgttgttag |
395 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
23850710 |
taaacggatggtttacttccttgaatcattgctgttagattcccaatgcagggagggattgaccccatcaacatgttgttag |
23850791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 22617102 - 22617481
Alignment:
| Q |
14 |
atggtgtttggaattgagcttgaaagttgatcatgagagaaatccaaagattcaagtaacttcatgtctcctatggttgtaggaatttcccctgacagat |
113 |
Q |
| |
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||||||| ||||||||||| |||||||||| | ||||||| ||||| ||||||||| |||||||||| ||||||| |||||||||||| ||||||| || |
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| T |
22617102 |
atggtgtgtggaattgagcctgaaagttgaccctgagagaggtccaacgattcaagtgacttcatgtcccctatggctgtaggaatttcacctgacaaat |
22617201 |
T |
|
| Q |
114 |
tattatgtgacagatttaggcctcgtaaagcagtaagaagagttatttctttaggaataggtccactcaaattgttgtttgataaatccaaattggccac |
213 |
Q |
| |
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||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |
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|
| T |
22617202 |
gattgtgtgacaggtttaggcctcgtaaagcagtcagaagagttatttctttaggaataggtccactcaaactgttgtttgataaatccacattggccac |
22617301 |
T |
|
| Q |
214 |
aaatttcagatttcttgtatagtgatcttctcttcctttaatgacctggctgacatcttgttcataccattcaatatacttcggctcaccaggagctaag |
313 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| || |||||| |
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| T |
22617302 |
aaatttcaaatttcttgtataatgatcttctcttcctttaatgacctggctgacatcttgttcataccattcaatatatgtcgactcactgggtgctaag |
22617401 |
T |
|
| Q |
314 |
taaacggatggtttacttccttgaaccattgctgttagatttccaatgcattgagggattgaccccatcaacatgttgtt |
393 |
Q |
| |
|
|||| |||||||| | |||||||| ||||||||| | ||| |||| ||| || |||||||||||||||||||| ||||| |
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|
| T |
22617402 |
gaaacagatggtttccatccttgaatcattgctgtaaaattcccaacgcagtgtgggattgaccccatcaacatattgtt |
22617481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 56 - 393
Target Start/End: Complemental strand, 20574213 - 20573876
Alignment:
| Q |
56 |
tccaaagattcaagtaacttcatgtctcctatggttgtaggaatttcccctgacagattattatgtgacagatttaggcctcgtaaagcagtaagaagag |
155 |
Q |
| |
|
||||||||||||||| ||| |||||| ||||||| |||||||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||| |
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| T |
20574213 |
tccaaagattcaagtgactccatgtcccctatggctgtaggaatttcacctgacagatgattgtgtgacagatttagttctcgtaaagcagtaagaagag |
20574114 |
T |
|
| Q |
156 |
ttatttctttaggaataggtccactcaaattgttgtttgataaatccaaattggccacaaatttcagatttcttgtatagtgatcttctcttcctttaat |
255 |
Q |
| |
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|||||||||| ||||||| |||| ||||| |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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|
| T |
20574113 |
ttatttcttttggaatagatccagtcaaactgttgtttgataaatccacattggccacaaatttcaaatttcttgtataatgatcttctcttcctttaat |
20574014 |
T |
|
| Q |
256 |
gacctggctgacatcttgttcataccattcaatatacttcggctcaccaggagctaagtaaacggatggtttacttccttgaaccattgctgttagattt |
355 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||| || |||||| ||||| ||| ||||| ||||||| | |||||||| ||||||||| ||||| |
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| T |
20574013 |
gacctggctgacatcttgctcataccattcaatatacctcaactcaccgggagcaaaggaaacgaatggtttccatccttgaatcattgctgtaagattc |
20573914 |
T |
|
| Q |
356 |
ccaatgcattgagggattgaccccatcaacatgttgtt |
393 |
Q |
| |
|
|||| ||| |||||||||||||||||||| |||||||| |
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|
| T |
20573913 |
ccaacgcagtgagggattgaccccatcaaaatgttgtt |
20573876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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