View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_13 (Length: 402)
Name: NF8650_low_13
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 43578393 - 43578027
Alignment:
| Q |
18 |
agtgggtgtttgagataaagtgttgttgatggtggtggtagtgaagggaagagtggcacggttgaaagtgtgtttgagagagaaagaagatagaaatggg |
117 |
Q |
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| T |
43578393 |
agtgggtgtttgagataaagtgttgttgatggtggtggtagtgaagggaagagtggcacggttgaaagtgtgtttgagagagaaagaagatagaaatggg |
43578294 |
T |
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| Q |
118 |
cgatgggtgagaatagaaaaaagaggggtgcgtttggccattgaaacggttccacgcagcatttcgttaaagaaagaaaacaaagagagaggaaaacgac |
217 |
Q |
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| T |
43578293 |
cgatgggtgagaatagaaaaaagaggggtgcgtttggccattgaaacggttccacgcagcatttcgttaaagaaagaaaacaaagagagaggaaaacgac |
43578194 |
T |
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| Q |
218 |
ctcggacctgtgatgttgtttgtgttcaaaaccctatccatatatgtcccgcgtacttcgtctcttgatgatgttctgttctgcggaccgtgattcactg |
317 |
Q |
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| T |
43578193 |
ctcggacctgtgatgttgtttgtgttcaaaaccctatccatatatgtcccgcgtacttcgtc---------tgttctgttctgcggaccgtgattcactg |
43578103 |
T |
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| Q |
318 |
cagtcataaatttgataaggtcaagcagtcaaacaaaagataaccatccgatctaatcaacgctgtagattcttct |
393 |
Q |
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| T |
43578102 |
cagtccttaatttgataaggtcacgcagtcaaacaaaagatagccatccgatctaatcaacgctgtagattcttct |
43578027 |
T |
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