View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_14 (Length: 389)
Name: NF8650_low_14
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 53 - 365
Target Start/End: Original strand, 50159155 - 50159467
Alignment:
| Q |
53 |
ttctccaaggtcattactcactcataatttgattttattttccttaataattcttcaaaatcattcccttgttttaattaattaaaattgcttgttttct |
152 |
Q |
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| T |
50159155 |
ttctccaaggtcattactcactcataatttgattttattttccttaataattcttcaaaatcattcccttgttttaattaattaaaattgcttgttttct |
50159254 |
T |
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| Q |
153 |
gttacagtgcgaagtcatggctgcctccatcaaacacatggctctcgctgtttcgttacttggtttcgtctctttcatactcggtgttattgccgaaaac |
252 |
Q |
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| T |
50159255 |
gttacagtgcgaagtcatggctgcctccatcaaacacatggctctcgctgtttcgttacttggtttcgtctctttcatactcggtgttattgccgaaaac |
50159354 |
T |
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| Q |
253 |
aaaaaggtagtattactctttcttaccttttcatcaaaaatcaattatttatctttgtgtaaagaatgtcgcgtcaatatcatctaatcaacttttgact |
352 |
Q |
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| T |
50159355 |
aaaaaggtagcattactctttcttactttttcatcaaaaatcaattatttatctttgtgtaaagtatgtcgcgtcaatattatctaatcaacttttgact |
50159454 |
T |
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| Q |
353 |
ttaatttatctat |
365 |
Q |
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||||||||||||| |
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| T |
50159455 |
ttaatttatctat |
50159467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 22988642 - 22988555
Alignment:
| Q |
169 |
atggctgcctccatcaaacacatggctctcgctgtttcgttacttgg-----tttcgtctctttcatactcggtgttattgccgaaaa |
251 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |||||||| |
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| T |
22988642 |
atggctgccttcgtcaaacacatggctctcgctgtttcgttacttggtgtcatctcttctctttcatactcggtgttatagccgaaaa |
22988555 |
T |
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