View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_15 (Length: 378)
Name: NF8650_low_15
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 25306550 - 25306793
Alignment:
| Q |
16 |
cactgaaccatatactctgtgaatcaacgattaaggctgtaagcattgtactactacatataatcggacgggtgtgggcactgatggtctaaatattggc |
115 |
Q |
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| T |
25306550 |
cactgaaccatataccctgtgaatcaacgattaaggctgtaagcattgtactactacatataatcggacgggtgtgggcaccgatggtctaaatattggc |
25306649 |
T |
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| Q |
116 |
atccgaaccgatccacttgtgtccaccttaatccgnnnnnnnctacccatgtgacccgccaaccgactcaatccgcccgcttcggttttttatgggccgg |
215 |
Q |
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| T |
25306650 |
atccgaaccgatccacttgtatccaccttaatccgtttttttctacccgtgtgacccgccaaccgactcaatccgcccgctttggttttttatgggccgg |
25306749 |
T |
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| Q |
216 |
tttgcacggattcgggcggatatggatattttgtccaaccctac |
259 |
Q |
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| T |
25306750 |
tttgcacggattcgggcggatttggatattttgtccagccctac |
25306793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 258
Target Start/End: Complemental strand, 25305302 - 25305060
Alignment:
| Q |
16 |
cactgaaccatatactctgtgaatcaacgattaaggctgtaagcattgtactactacatataatcggacgggtgtgggcactgatggtctaaatattggc |
115 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25305302 |
cactgaaccatataccctgtgaatcaacgattaaggctgtaagcattgtactactacatataatcggacgggtgtgggcaccgatggtctaaatattggc |
25305203 |
T |
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| Q |
116 |
atccgaaccgatccacttgtgtccaccttaatccgnnnnnnnctacccatgtgacccgccaaccgactcaatccgcccgcttcggttttttatgggccgg |
215 |
Q |
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| T |
25305202 |
atccgaaccgatccacttgtatccaccttaatccgtttttttctacccgtgtgacccgccaaccgactcaatccgcccgcttcgattttttatgggccgg |
25305103 |
T |
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| Q |
216 |
tttgcacggattcgggcggatatggatattttgtccaacccta |
258 |
Q |
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| T |
25305102 |
tttgcacggattcgggtggatttggatattttgtccagcccta |
25305060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 259 - 364
Target Start/End: Complemental strand, 33383008 - 33382903
Alignment:
| Q |
259 |
ccaccttttctatttgtccaaatctgctttgtttttgtggatgaaactaaataactggattgtcctttccacatgtggatttatttattatacacatgca |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383008 |
ccaccttttctatttgtccaaatctgctttgtttttgtggatgaaactaaataactggattgtcctttccacatgtggatttatttattatacacatgca |
33382909 |
T |
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| Q |
359 |
acactt |
364 |
Q |
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|||||| |
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| T |
33382908 |
acactt |
33382903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 41026818 - 41026766
Alignment:
| Q |
199 |
ggttttttatgggccggtttgcacggattcgggcggatatggatattttgtcc |
251 |
Q |
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| T |
41026818 |
ggttttttatggaccggtttgcacggactcgggcgaatatggatattttgtcc |
41026766 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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