View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_17 (Length: 340)
Name: NF8650_low_17
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 46018897 - 46019209
Alignment:
| Q |
17 |
catcatcatctacatcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaaatca |
116 |
Q |
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| T |
46018897 |
catcatcatctacatcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaaatca |
46018996 |
T |
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| Q |
117 |
tatgaaatagtatcaaacaaccaaattaataacttcaagatcaaagtagagaatcattactgaacacaataacatttcaaacaacagtatattttcttac |
216 |
Q |
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| T |
46018997 |
tatgaaatagtatcaaacaaccaaattaataacttcaagatcaaagtagagaatcattactgaacacaataatatttcaaacaacagtatattttcttac |
46019096 |
T |
|
| Q |
217 |
atttcttaatgaatcttcattagttatcaacagctgcaaaaagtccttaatagtgtgtattccatccgaggccaactgcttgtcaagtgttccatctcta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46019097 |
atttcttaatgaatcttcattagttatcaacagctgcaaaaaatccttaatagtgtgtattccatccaaggccaactgcttgtcaagtgttccatctcta |
46019196 |
T |
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| Q |
317 |
cgtattcatctca |
329 |
Q |
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||||||| ||||| |
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| T |
46019197 |
cgtattcctctca |
46019209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 185 - 305
Target Start/End: Original strand, 46031701 - 46031821
Alignment:
| Q |
185 |
ataacatttcaaacaacagtatattttcttacatttcttaatgaatcttcattagttatcaacagctgcaaaaagtccttaatagtgtgtattccatccg |
284 |
Q |
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|||| ||||||||||| ||||||||||||||| | |||||||||| ||||||| ||||| ||| |||||| ||||||| ||||||||||||||| | |
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| T |
46031701 |
ataatatttcaaacaatagtatattttcttacctctcttaatgaagcttcattggttatgtacaatctcaaaaaatccttaacagtgtgtattccatctg |
46031800 |
T |
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| Q |
285 |
aggccaactgcttgtcaagtg |
305 |
Q |
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| T |
46031801 |
atgccaacagcttgtcaagtg |
46031821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 46031537 - 46031637
Alignment:
| Q |
13 |
tcatcatcatcatctacatcacaatgtttagcatgtgcaataattttcttccataacttcccaccagtcttgtctattttctattttcccaaagccaaaa |
112 |
Q |
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|||||||||| ||||||||||||| |||||||||||||| |||| | |||||| | |||| || ||||| ||||||||||||||||||||||||||| |
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| T |
46031537 |
tcatcatcattgtctacatcacaatctttagcatgtgcaacaattgtattccatgaattccttgcaatcttgcctattttctattttcccaaagccaaaa |
46031636 |
T |
|
| Q |
113 |
a |
113 |
Q |
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| T |
46031637 |
a |
46031637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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