View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_18 (Length: 320)
Name: NF8650_low_18
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 39782807 - 39782504
Alignment:
| Q |
1 |
gaatgcttaacaaaaaattggatgaaattttaggtgcgattagcgaagttgtttcattcattatatctcgtcaaaaataaaataggttcaaattgacaaa |
100 |
Q |
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| T |
39782807 |
gaatgcttaacaaaaaattggatgaaattttaggtgcgattagtgaagttgtttcattcattatatctcgtcaaaaataaaataggttcaaattgacaaa |
39782708 |
T |
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| Q |
101 |
aagaacggatatcaacttgcatatgtataaaaacttgatttattgttagtatgacttgttacttgttattatagttacgttgatagaaagaagtgagtag |
200 |
Q |
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| T |
39782707 |
aagaacggatatcaacttgcatatgtataaaaacttgatttattgttaggatgacttgttacttgttattatagttacgttgatagaaagaagtgagtag |
39782608 |
T |
|
| Q |
201 |
acactattagtacctaccatgataaaggttttgtgaaatggtaagagtgcaagagaaacacacgatttttaatagaatacatccttttaatacagggagt |
300 |
Q |
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| T |
39782607 |
acactattagtacctaccatgataaaggttttgtgaaatggtaagagtgcaagagaaacgcacgatttttaatagaatacatccttttaatacagggagt |
39782508 |
T |
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| Q |
301 |
tgtt |
304 |
Q |
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|||| |
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| T |
39782507 |
tgtt |
39782504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 51 - 291
Target Start/End: Complemental strand, 39789213 - 39788966
Alignment:
| Q |
51 |
gtttcattcattatatctcgtcaaaaataaaataggttcaaattgacaaaaagaacggatatcaacttgcatatgtataaaaacttgatttattgttagt |
150 |
Q |
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|||| ||||||||||||| ||| |||||| |||||||| ||||||||||||| | |||||||||| ||||||||| || ||||||| ||||||||||| |
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| T |
39789213 |
gtttaattcattatatctggtctaaaatagaataggtttaaattgacaaaaaaa--ggatatcaacatgcatatgtttacaaacttggtttattgttagg |
39789116 |
T |
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| Q |
151 |
atgacttgttacttgttattatagttacgttgatagaaagaagtgagtagaca----------ctattagtacctaccatgataaaggttttgtgaaatg |
240 |
Q |
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| T |
39789115 |
atgaattgttgttacttgttactctta-gttgatagaaagaagtgactagattatttaggaatctattagtacctatcatgataaaggttttttgaaatg |
39789017 |
T |
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| Q |
241 |
gtaagagtgcaagagaaacacacgatttttaatagaatacatccttttaat |
291 |
Q |
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| T |
39789016 |
gtaagtatgcaagagaaacactcgatttttaatagaatacttcattttaat |
39788966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 39793976 - 39793850
Alignment:
| Q |
38 |
gattagcgaagttgttt-cattcattatatctcgtcaaaaataaaataggttcaaattgacaaaaagaacggatatcaacttgcatatgtataaaaactt |
136 |
Q |
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||||| ||||||||||| ||||||||||| || || || |||| |||||||| ||||||||| ||| | | ||| ||||||||||||||||| |||||| |
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| T |
39793976 |
gattaacgaagttgttttcattcattataactggtaaagaatataataggttgaaattgacagaaaaa--gaataacaacttgcatatgtatataaactt |
39793879 |
T |
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| Q |
137 |
gatttattgttagtatgacttgttacttg |
165 |
Q |
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| T |
39793878 |
ggtttactgttaggatgagttgttacttg |
39793850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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