View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_2 (Length: 554)
Name: NF8650_low_2
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 657416 - 657952
Alignment:
| Q |
1 |
tcatttccatggtgttgacagcatgaagatcaccataaccaacagttgtcatggtagtgatggaccaataaattgctgaaatatatctaatccgaaggct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
657416 |
tcatttccatggtgttgacagcatgaagatcaccataaccaacagttgtcatggtagtgatggaccaataaattgctgaaatatatctaatccgagggct |
657515 |
T |
|
| Q |
101 |
tgtctctcggaagtttggaatcacagctccaatccatgtctttccttcatgagggtacatatcagctagcatgtaatagaggcacccagcacaatgaact |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
657516 |
tgtctctctgaagtttggaatcacagctccaatccatgtctttccttcatgagggtacatatcagctagcatgtaatagaggcacccagcacaatgaact |
657615 |
T |
|
| Q |
201 |
gaaaaaagtgttacctacaccataattttcaacataatcacttataattgtttcaatatatttatcgactaattcaatagttaacttttgcaaatacttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
657616 |
gaaaaaagtgttacctacaccataattttcaacataatcacttataattgtttcaatatatttatcgactaattcaatcgttaacttttgcaaatacttt |
657715 |
T |
|
| Q |
301 |
aaattcaatctgctaacttatttcattatcagctatcaactagtttataaccgttattttgttatgaaatgaaatgtgacatacagaaagaagcctggca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
657716 |
aaattcaatctgctaacttatttcattatcagctatcaactagtttataaccgttattttcttatgaaatgaaatgtgacatacagaaagaagcctggca |
657815 |
T |
|
| Q |
401 |
catctgacccagaaatagttgaacctgatgtctttctcaagcctggaaagacaaataaatcaatgctaacacagattcatatggtaaggtagatcattaa |
500 |
Q |
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| T |
657816 |
catctgacccagaaatagttgaacctgatgtctttctcaagcctggaaagacaaataaatcaatgctaacacacattcatatggtaaggtagatcattaa |
657915 |
T |
|
| Q |
501 |
ttagaaaaagattaagattaagaaccttgtgaagaat |
537 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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|
| T |
657916 |
ttagaaaaagattaagattaagaaccttgtgaagaat |
657952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 25505750 - 25505957
Alignment:
| Q |
1 |
tcatttccatggtgttgacagcatgaagatcaccataaccaacagttgtcatggtagtgatggaccaataaattgctgaaatatatctaatccgaaggct |
100 |
Q |
| |
|
|||||| ||||||||||||| | |||||| ||||||||||||||| ||||||| |||||| |||| || |||||||||||||| ||||||||| |||||| |
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|
| T |
25505750 |
tcattttcatggtgttgacaacgtgaagaacaccataaccaacagatgtcatgatagtgagggacaaaaaaattgctgaaataaatctaatcc-aaggct |
25505848 |
T |
|
| Q |
101 |
tgtctctcggaagtttggaatcacagctccaatccatgtctttccttcatgagggtacatatcagctagcatgtaatagaggcacccagcacaatgaact |
200 |
Q |
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| |||||| ||||||||||| |||| | ||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
25505849 |
tatctctctgaagtttggaaccacaaccccaatccatatctatccttcacgagggtacatatcagctagc-tgtaatagaggcacccaacacaatgaact |
25505947 |
T |
|
| Q |
201 |
gaaaaaagtg |
210 |
Q |
| |
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|||||||||| |
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|
| T |
25505948 |
gaaaaaagtg |
25505957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 8730157 - 8729950
Alignment:
| Q |
1 |
tcatttccatggtgttgacagcatgaagatcaccataaccaacagttgtcatggtagtgatggaccaataaattgctgaaatatatctaatccgaaggct |
100 |
Q |
| |
|
|||||| ||||||||||||| | |||||| ||||||||||||||| ||||||| |||||| |||| || |||||||||||||| ||||||||| |||||| |
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| T |
8730157 |
tcattttcatggtgttgacaacgtgaagaacaccataaccaacagatgtcatgatagtgagggacaaaaaaattgctgaaataaatctaatcc-aaggct |
8730059 |
T |
|
| Q |
101 |
tgtctctcggaagtttggaatcacagctccaatccatgtctttccttcatgagggtacatatcagctagcatgtaatagaggcacccagcacaatgaact |
200 |
Q |
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| |||||| ||||||||||| |||| | ||||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
8730058 |
tatctctctgaagtttggaaccacaaccccaatccatatctatccttcacgagggtacatatcagctagc-tgtaatagaggcacccaacacaatgaact |
8729960 |
T |
|
| Q |
201 |
gaaaaaagtg |
210 |
Q |
| |
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|||||||||| |
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|
| T |
8729959 |
gaaaaaagtg |
8729950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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