View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8650_low_22 (Length: 275)
Name: NF8650_low_22
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 51559596 - 51559846
Alignment:
| Q |
1 |
agagaagagaagagtgaaaaatgggaagcagaggtccaccgcaaaaacatcctaattctgaagtttctacaaagagttacaacttcactaccacttggga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51559596 |
agagaagagaagagtgaaaaatgggaagcagaggtccaccgcaaaaacatcctaattctgaagtttctacaaagagttacaacttcactaccacttggga |
51559695 |
T |
|
| Q |
101 |
acaagtacgtacttctctttcatagatctatctcctttttctcagatcagatcagatcagatctaactaattcatgtttggcagaatgctcctttatccg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51559696 |
acaagtacgtacttctctttcatagatctatctcctttttc-----tcagatcagatcagatctaactaattcatgtttggcagaatgctcctttatccg |
51559790 |
T |
|
| Q |
201 |
atcaacaacaaaacgccattatttccctttctcatgctgtttctgaacgtcctttc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51559791 |
atcaacaacaaaacgccattatttccctttctcatgctgtttctgaacgtcctttc |
51559846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University