View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_23 (Length: 273)
Name: NF8650_low_23
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_23 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 273
Target Start/End: Complemental strand, 54396269 - 54396011
Alignment:
| Q |
15 |
atgaatcctaatcattttatatttcaactacttggaataaagcctggggaagctcctatgtgccatttcttccctgtaaagcacgttctatgggcaccac |
114 |
Q |
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| T |
54396269 |
atgaatcctaatcattttatatttcaactacttggaataaagcctggggaagctcctatgtgccatttcttccctgtaaagcatgttctatgggcaccac |
54396170 |
T |
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| Q |
115 |
tcccaccagaggccacccactgaaccaaagggaactagttgatcatatttctatgtcattccctatgcttcatggtgtttaactgttatgaatttctatg |
214 |
Q |
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| T |
54396169 |
tcccaccagaggccacccactgaaccaaagggaactagttgatcatatttctatgtcattccctatgcttcatggtgtttaactgttatgattttctatg |
54396070 |
T |
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| Q |
215 |
tattgtagggtcttgtttgtgtgctaaataaggttgtgtttgtgtactaattaaggtct |
273 |
Q |
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| T |
54396069 |
tattgtagggtcttgtttgtgtgctaaataaggttgtgtttgtgtactaattaaggtct |
54396011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 54381385 - 54381246
Alignment:
| Q |
15 |
atgaatcctaatcattttatatttcaactacttggaataaagcctggggaagctcctatgtgccatttcttccctgtaaagcacgttctatgggcaccac |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| || ||||||| |||| |
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| T |
54381385 |
atgaatcctaatcattttatatttcaactacttggaatgaagcctggggaagctccactgtgtcatttcttccctgtaaagcacattgtatgggcgccac |
54381286 |
T |
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| Q |
115 |
tcccaccagaggccacccactgaaccaaagggaactagtt |
154 |
Q |
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| T |
54381285 |
tcccaccagaggccaccaactgaacaagagggaactagtt |
54381246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 54395911 - 54395863
Alignment:
| Q |
223 |
ggtcttgtttgtgtgctaaataaggttgtgtttgtgtactaattaaggt |
271 |
Q |
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| T |
54395911 |
ggtcttgtttgtgtgctaattaaggccgtgtttgtgtactaattaaggt |
54395863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 54395986 - 54395936
Alignment:
| Q |
223 |
ggtcttgtttgtgtgctaaataaggttgtgtttgtgtactaattaaggtct |
273 |
Q |
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| T |
54395986 |
ggtcttgtttatgtactaattaaggccgtgtttgtgtactaattaaggtct |
54395936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 271
Target Start/End: Complemental strand, 54381197 - 54381122
Alignment:
| Q |
198 |
tgttatgaatttctatgtattgtagggtcttgtttgtgtg--ctaaataaggttgtgtttgtgtactaattaaggt |
271 |
Q |
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| T |
54381197 |
tgttgtgaatttctcagtactgtaaggtcttgtttctgtgtactaaataaggtattgtttgtgtactaaataaggt |
54381122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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