View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_25 (Length: 259)
Name: NF8650_low_25
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 29666425 - 29666225
Alignment:
| Q |
19 |
gtagaaataaccttaattaaattaattaaataatagtattaggtttgaaataaaaaagggagagtgaaggtaagtgggaaaattatgacgtgcagattga |
118 |
Q |
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| T |
29666425 |
gtagaaataaccttaattaaattaattaaataatagtattaggtttgaaataaaaaagggagagtgaaggtaagtgggaaaattatgacgtgcagattga |
29666326 |
T |
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| Q |
119 |
aatacgataagccgtgg-nnnnnnnnatgaaaccgggcagttattttcttttgacacatgacatgcaaaggatctttcaaaaagatcatgtaaaggaaaa |
217 |
Q |
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| T |
29666325 |
aatacgataagccgtggtttttttttatgaaaccgggcagttattttcttttgacacatgacatgcaaaggatctttcaaaaagatcatgtaaaggaaaa |
29666226 |
T |
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| Q |
218 |
a |
218 |
Q |
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| T |
29666225 |
a |
29666225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 29665819 - 29665786
Alignment:
| Q |
210 |
aaggaaaaatggtaccgatacatcatctatattc |
243 |
Q |
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| T |
29665819 |
aaggaaaaatggtaccgatacattatctatattc |
29665786 |
T |
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