View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_26 (Length: 257)
Name: NF8650_low_26
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 40001645 - 40001413
Alignment:
| Q |
19 |
cttctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttcatcaggatgtgctctacgtaacaacgatttttacc |
118 |
Q |
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| T |
40001645 |
cttctgcctatgattttcagagtaataagaaaaacaaaaagtcgcagaaaatataaatgtctttcatcaggatgtgctctacgtaacaacgatttttacc |
40001546 |
T |
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| Q |
119 |
atgaaatcgatcaagggtactacacctaccatggagaacaagcttctcattcaagagttgatgattatggagagaaaattgattatcgaagatataattc |
218 |
Q |
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| T |
40001545 |
atgaaatcgatcaagggtactacacctaccatggagaaccagcttctcattcaagagttgatgattatggagagaaaattgattatcgaagatataattc |
40001446 |
T |
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| Q |
219 |
tgttacagaattctctaatggattctctgcttc |
251 |
Q |
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| T |
40001445 |
tgttacagaattctctaatgtattctcttcttc |
40001413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 43103438 - 43103321
Alignment:
| Q |
129 |
tcaagggtactacacctaccatggagaacaagcttctcattcaagagttgatgattatggagagaaaattgattatcgaagatataattctgttacagaa |
228 |
Q |
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||||||| |||||| |||||||||||||||| ||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||| ||| |
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| T |
43103438 |
tcaagggcactacaactaccatggagaacaatcttctaattcaagggttgatgattatgcagacaaaattgattatcgaagatataattctgttatggaa |
43103339 |
T |
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| Q |
229 |
ttctctaatggattctct |
246 |
Q |
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| T |
43103338 |
ttctctaatgggttctct |
43103321 |
T |
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