View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8650_low_28 (Length: 251)

Name: NF8650_low_28
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8650_low_28
NF8650_low_28
[»] chr1 (8 HSPs)
chr1 (1-233)||(47584158-47584390)
chr1 (39-233)||(47574496-47574690)
chr1 (112-203)||(47287562-47287653)
chr1 (105-193)||(47627160-47627248)
chr1 (113-223)||(47568252-47568361)
chr1 (126-193)||(47593026-47593093)
chr1 (130-203)||(47607295-47607368)
chr1 (168-232)||(47698389-47698453)
[»] chr6 (7 HSPs)
chr6 (126-233)||(20233204-20233311)
chr6 (126-233)||(22127188-22127295)
chr6 (113-184)||(22086200-22086271)
chr6 (113-191)||(18979739-18979817)
chr6 (113-187)||(21968313-21968387)
chr6 (129-191)||(22206807-22206869)
chr6 (130-191)||(18991091-18991152)
[»] chr5 (3 HSPs)
chr5 (165-229)||(454555-454619)
chr5 (165-233)||(470076-470144)
chr5 (126-229)||(486966-487069)
[»] scaffold0074 (1 HSPs)
scaffold0074 (129-191)||(49583-49645)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 47584158 - 47584390
Alignment:
Q  1 tttgtggatccgttcttatttgaactcgaaattgaccatccaaagaaactaacattgtagatccccataagcgaaagcttttaccttggtctcaacgcca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584158 tttgtggatccgttcttatttgaactcgaaattgaccatccaaagaaactaacattgtagatccccataagcgaaagcttttaccttggtctcaacgcca 47584257  T
Q  101 gaagatcatcaaaggaattgcccgtggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttatta 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47584258 gaagatcatcaaaggaattgcccgtggaattctttacctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttatta 47584357  T
Q  201 gatagtaacatgaacccaaaaatatcagatttt 233  Q
    |||||||||||||||||||||||||||||||||    
T  47584358 gatagtaacatgaacccaaaaatatcagatttt 47584390  T

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Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 47574496 - 47574690
Alignment:
Q  39 tccaaagaaactaacattgtagatccccataagcgaaagcttttaccttggtctcaacgccagaagatcatcaaaggaattgcccgtggaattctttatc 138  Q
    |||||| ||||||| |||||||| ||||| |||||||| || ||| ||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  47574496 tccaaataaactaatattgtagacccccagaagcgaaaactattatcttggtctcaacgtcagaaaatcatcaaaggagttgcccgtggaattctttatc 47574595  T
Q  139 tccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatatcagatttt 233  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||| | |||||| |||| ||||| ||||||||||||||||||    
T  47574596 tccatgaagattctcgcctcaaaatcatacatcgtgatctgaaacctagcgatgtcctgttagatggtaatatgaatccaaaaatatcagatttt 47574690  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 112 - 203
Target Start/End: Original strand, 47287562 - 47287653
Alignment:
Q  112 aaggaattgcccgtggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagat 203  Q
    ||||||||||||||||||| |||||||| || ||||||||||| || | ||| |||||||| ||||||||| |||| ||| | |||||||||    
T  47287562 aaggaattgcccgtggaatgctttatcttcacgaagattctcgacttagaatcatacatcgcgatcttaaagctagtaatatattattagat 47287653  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 47627160 - 47627248
Alignment:
Q  105 atcatcaaaggaattgcccgtggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgt 193  Q
    ||||| ||||| ||||| || ||||||||||| || |||||||||||||| ||||| || ||||| |||||| ||||||| ||||||||    
T  47627160 atcattaaagggattgctcgaggaattctttaccttcatgaagattctcgtctcaagattatacaccgtgatattaaaccaagcaatgt 47627248  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 223
Target Start/End: Original strand, 47568252 - 47568361
Alignment:
Q  113 aggaattgcccgtggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatg 212  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||| ||||| | |||  ||||||| |||| ||| ||||| || |||||| |||||| |    
T  47568252 aggaattgctcgaggaattctttatctccatgaggattcacgccttaaaatta-acacagtgatctaaaacatagtaatgttttgttagatggtaacaag 47568350  T
Q  213 aacccaaaaat 223  Q
     | ||||||||    
T  47568351 gaaccaaaaat 47568361  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 47593026 - 47593093
Alignment:
Q  126 ggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgt 193  Q
    |||||||||||| | |||||| ||||||| |||||| | |||||||| ||||| |||||||| |||||    
T  47593026 ggaattctttatttgcatgaatattctcgtctcaaagttatacatcgggatctcaaacctagtaatgt 47593093  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 47607295 - 47607368
Alignment:
Q  130 ttctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagat 203  Q
    |||||||| | |||||  ||||||| || ||| | ||||||||||||||||||||||| ||| | |||||||||    
T  47607295 ttctttatttacatgattattctcgactaaaagttatacatcgtgatcttaaacctagtaatattttattagat 47607368  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 232
Target Start/End: Original strand, 47698389 - 47698453
Alignment:
Q  168 catcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatatcagattt 232  Q
    ||||||||||| |||||||| ||||| || ||||||  ||||||||| || |||||||| |||||    
T  47698389 catcgtgatctcaaacctagtaatgtattgttagatgataacatgaatcctaaaatatctgattt 47698453  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 20233204 - 20233311
Alignment:
Q  126 ggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatat 225  Q
    |||||||| ||| | |||||| ||||||| |||||| | || |||||||| || |||||||| ||| | |||||||||   |||||||  ||||||||||    
T  20233204 ggaattctctatttgcatgaacattctcgactcaaagttattcatcgtgacctcaaacctagtaatattttattagatgagaacatgattccaaaaatat 20233303  T
Q  226 cagatttt 233  Q
    ||||||||    
T  20233304 cagatttt 20233311  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 233
Target Start/End: Original strand, 22127188 - 22127295
Alignment:
Q  126 ggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatat 225  Q
    |||||||| ||| | |||||| ||||||| |||||| | || |||||||| || |||||||| ||| | |||||||||   |||||||  ||||||||||    
T  22127188 ggaattctctatttgcatgaacattctcgactcaaagttattcatcgtgacctcaaacctagtaatattttattagatgagaacatgattccaaaaatat 22127287  T
Q  226 cagatttt 233  Q
    ||||||||    
T  22127288 cagatttt 22127295  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 184
Target Start/End: Complemental strand, 22086271 - 22086200
Alignment:
Q  113 aggaattgcccgtggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacc 184  Q
    |||||||||  | |||||||||||| | |||||| ||||||| |||||| | |||||||||||||| |||||    
T  22086271 aggaattgctggaggaattctttatttgcatgaacattctcgactcaaagttatacatcgtgatctcaaacc 22086200  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 191
Target Start/End: Complemental strand, 18979817 - 18979739
Alignment:
Q  113 aggaattgcccgtggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaat 191  Q
    ||||||||  |||||| |||||||| | |||||| ||||||| |||||| | |||||||| ||| | ||||||||||||    
T  18979817 aggaattgttcgtggacttctttatttgcatgaacattctcgactcaaagttatacatcgggatgtcaaacctagcaat 18979739  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 187
Target Start/End: Complemental strand, 21968387 - 21968313
Alignment:
Q  113 aggaattgcccgtggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctag 187  Q
    ||||||||| || |||||||||||| | |||||  ||||||| |||||| | |||||||| ||||| ||||||||    
T  21968387 aggaattgctcgaggaattctttatttgcatgagcattctcgactcaaagttatacatcgcgatctcaaacctag 21968313  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 22206807 - 22206869
Alignment:
Q  129 attctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaat 191  Q
    ||||||||| | |||||| ||||||| |||||| | |||||||| ||||| ||||||||||||    
T  22206807 attctttatttgcatgaaaattctcgactcaaagttatacatcgggatctcaaacctagcaat 22206869  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 18991152 - 18991091
Alignment:
Q  130 ttctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaat 191  Q
    |||||||| | |||||| ||||||| |||||| | |||||||| ||||| ||||||||||||    
T  18991152 ttctttatttgcatgaacattctcgactcaaagttatacatcgggatctcaaacctagcaat 18991091  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 229
Target Start/End: Complemental strand, 454619 - 454555
Alignment:
Q  165 atacatcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatatcaga 229  Q
    |||||||||||||| |||||||||||| | || |||||||  || ||||| ||||||||||||||    
T  454619 atacatcgtgatctcaaacctagcaatatattgttagataagaatatgaatccaaaaatatcaga 454555  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 233
Target Start/End: Complemental strand, 470144 - 470076
Alignment:
Q  165 atacatcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatatcagatttt 233  Q
    |||||||| ||||| |||||||||||||| || ||||||   || ||||| ||||||||||||||||||    
T  470144 atacatcgagatctcaaacctagcaatgtattgttagatgacaaaatgaatccaaaaatatcagatttt 470076  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 487069 - 486966
Alignment:
Q  126 ggaattctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaatgtcttattagatagtaacatgaacccaaaaatat 225  Q
    |||||||||||||| |||||||||||| | ||  ||||||||||| | ||||| ||| | || ||||| ||||| || | | ||||||||||||| || |    
T  487069 ggaattctttatcttcatgaagattctagacttcaaataatacatagagatctaaaagcaagtaatgtgttattggacaatgacatgaacccaaagattt 486970  T
Q  226 caga 229  Q
    ||||    
T  486969 caga 486966  T

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Target: scaffold0074 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 49583 - 49645
Alignment:
Q  129 attctttatctccatgaagattctcgcctcaaaataatacatcgtgatcttaaacctagcaat 191  Q
    ||||||||| | |||||| ||||||| |||||| | |||||||| ||||| ||||||||||||    
T  49583 attctttatttgcatgaatattctcgactcaaagttatacatcgggatctcaaacctagcaat 49645  T

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