View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8650_low_3 (Length: 535)

Name: NF8650_low_3
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8650_low_3
NF8650_low_3
[»] chr4 (12 HSPs)
chr4 (70-520)||(40978758-40979189)
chr4 (77-225)||(12683754-12683905)
chr4 (165-225)||(47253337-47253397)
chr4 (141-239)||(19809734-19809835)
chr4 (195-284)||(3982728-3982817)
chr4 (195-285)||(39194160-39194250)
chr4 (165-293)||(2674477-2674605)
chr4 (177-234)||(50151766-50151823)
chr4 (165-285)||(10981926-10982044)
chr4 (175-239)||(26894679-26894743)
chr4 (165-227)||(17121616-17121677)
chr4 (173-229)||(19643770-19643826)
[»] chr6 (17 HSPs)
chr6 (165-293)||(34572897-34573025)
chr6 (72-285)||(34187263-34187474)
chr6 (165-324)||(3404731-3404893)
chr6 (165-218)||(12203616-12203669)
chr6 (165-223)||(15480314-15480372)
chr6 (165-240)||(22692153-22692227)
chr6 (165-218)||(18567369-18567421)
chr6 (165-225)||(9291991-9292050)
chr6 (165-217)||(19305524-19305576)
chr6 (165-224)||(20148375-20148434)
chr6 (165-224)||(22184394-22184453)
chr6 (164-197)||(689856-689889)
chr6 (177-218)||(9277279-9277320)
chr6 (173-218)||(10115663-10115708)
chr6 (164-229)||(17380156-17380221)
chr6 (175-245)||(2393452-2393519)
chr6 (141-225)||(34064228-34064315)
[»] chr2 (11 HSPs)
chr2 (70-223)||(45258125-45258281)
chr2 (18-70)||(41933808-41933860)
chr2 (77-229)||(36267467-36267622)
chr2 (77-216)||(45714964-45715106)
chr2 (165-247)||(23257842-23257923)
chr2 (165-214)||(27846501-27846550)
chr2 (165-225)||(3586423-3586483)
chr2 (165-245)||(17672033-17672111)
chr2 (175-245)||(17658030-17658099)
chr2 (176-245)||(17626971-17627039)
chr2 (165-237)||(27933704-27933775)
[»] chr8 (8 HSPs)
chr8 (165-240)||(30477701-30477777)
chr8 (71-289)||(13754721-13754942)
chr8 (164-225)||(23497134-23497195)
chr8 (70-240)||(13764951-13765124)
chr8 (165-204)||(24507517-24507556)
chr8 (165-202)||(6928084-6928121)
chr8 (77-105)||(17319716-17319744)
chr8 (177-225)||(23269306-23269354)
[»] chr5 (8 HSPs)
chr5 (165-239)||(27083195-27083269)
chr5 (176-291)||(29278942-29279057)
chr5 (165-247)||(20025343-20025425)
chr5 (165-217)||(34493573-34493625)
chr5 (165-238)||(4477258-4477330)
chr5 (165-285)||(8938972-8939091)
chr5 (168-285)||(26994517-26994634)
chr5 (165-202)||(22903153-22903190)
[»] scaffold0012 (1 HSPs)
scaffold0012 (176-240)||(149217-149281)
[»] chr1 (7 HSPs)
chr1 (175-247)||(8019018-8019090)
chr1 (165-241)||(2140903-2140979)
chr1 (165-225)||(16030455-16030515)
chr1 (165-218)||(5671830-5671883)
chr1 (175-218)||(18246212-18246255)
chr1 (90-197)||(12177368-12177478)
chr1 (181-225)||(32875448-32875492)
[»] chr3 (9 HSPs)
chr3 (165-224)||(9801056-9801115)
chr3 (165-225)||(16704462-16704522)
chr3 (165-225)||(30606988-30607048)
chr3 (175-218)||(6129506-6129549)
chr3 (165-223)||(21342260-21342318)
chr3 (164-202)||(28715482-28715520)
chr3 (165-218)||(2311812-2311865)
chr3 (173-218)||(8122893-8122938)
chr3 (172-201)||(12375345-12375374)
[»] scaffold0054 (1 HSPs)
scaffold0054 (165-224)||(68774-68833)
[»] scaffold0023 (1 HSPs)
scaffold0023 (165-224)||(95782-95841)
[»] scaffold0291 (1 HSPs)
scaffold0291 (165-203)||(15423-15461)
[»] chr7 (2 HSPs)
chr7 (165-203)||(26762904-26762942)
chr7 (173-218)||(9135339-9135384)
[»] scaffold0002 (1 HSPs)
scaffold0002 (164-225)||(120982-121043)
[»] scaffold0360 (1 HSPs)
scaffold0360 (141-228)||(13955-14045)


Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-150; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 70 - 520
Target Start/End: Complemental strand, 40979189 - 40978758
Alignment:
Q  70 tggtggtgatgagtcttcgtggtggaacgaaaggtggctacttgcatgttaacagtccaacattcaaattggtaatgaaactaaaaaagagtgttaaagt 169  Q
    |||||||||||||||| |||||||||||||||||||| |||   ||||||||||        ||||||| ||||||||||||||||||||||||||||||    
T  40979189 tggtggtgatgagtctccgtggtggaacgaaaggtggttacagacatgttaaca--------ttcaaatcggtaatgaaactaaaaaagagtgttaaagt 40979098  T
Q  170 gtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtgattagg 269  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  40979097 gtggtgaaaagtgaatcgtatcttgagggtgaagttaagtcacccttatctaagcgtgcgcgagaataaccatctccggaatatgcagcatgtgattagg 40978998  T
Q  270 gaatgattagaggacatgtgt---aggattgacgtgcggaggcgtgctcgagtgtgatgtggtgcattgatattgatatgtttcttcagacaatacgcct 366  Q
    ||||| |||||||||||||||   | ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||    
T  40978997 gaatggttagaggacatgtgtaagatgattgacgtacggaggcgtgctcgagtgtgatgtggtgcattgatattggtatgtttcttcagacactgcgcct 40978898  T
Q  367 ttgtgcgatggtcgtttggtcccaatataagattgaccttttgaccggtccagaaccgaaagagttgctgataaatacaatttagtaaacatattttgga 466  Q
    |||| || | |||||||||||||| ||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||| |    
T  40978897 ttgtacggtagtcgtttggtcccagtataagattgaccttttgaccggtccag---------------tgataaatacaatttagtaaacatattttgaa 40978813  T
Q  467 caataattcattatccttccttgaacgttact-ctttattttttgttgaataatc 520  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  40978812 caataattcattctccttccttgaacgttactcctttattttttgttgaataatc 40978758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 225
Target Start/End: Original strand, 12683754 - 12683905
Alignment:
Q  77 gatgagtcttcgtggtggaacgaaaggtggctacttgcatgttaacagtccaacattcaaattggtaatgaaactaaaaaagagtgtt---aaagtgtgg 173  Q
    |||||||||| | |||||||||||||||| || |  ||| |||| || ||||||  |||| || ||||||||||| | |||||||||    ||||||| |    
T  12683754 gatgagtctttgcggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttg 12683853  T
Q  174 tgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    ||||||||||||| |||||| |||||||||  |  |||||||||||||||||    
T  12683854 tgaaaagtgaatcataccttaagggtgaagcaagttcacccttatctaggcg 12683905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 47253337 - 47253397
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    ||||||| |||||||||||||| |||||||||||||||| |||||||||||||| ||||||    
T  47253337 aaagtgttgtgaaaagtgaatcataccttgagggtgaagctaagtcacccttatataggcg 47253397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 141 - 239
Target Start/End: Original strand, 19809734 - 19809835
Alignment:
Q  141 gtaatgaaactaaaaaagagtgtt---aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaata 237  Q
    ||||||||||||| |||||||||    ||||||| |||||||||||||  |||||||||||||||  |||||||||||||  |||||| ||| |||||||    
T  19809734 gtaatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaattataccttgagggtgaaactaagtcacccttacataggcgcgcgtgagaata 19809833  T
Q  238 ac 239  Q
    ||    
T  19809834 ac 19809835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 3982728 - 3982817
Alignment:
Q  195 agggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtgattagggaatgattagaggac 284  Q
    ||||||||| |||||||||||| | |||||||| | | ||||||||  |||| | ||||||||| |||||||||||| ||||||||||||    
T  3982728 agggtgaagctaagtcacccttctataggcgtgtgtgggaataaccgcctccaagatatgcagcgtgtgattagggagtgattagaggac 3982817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 39194160 - 39194250
Alignment:
Q  195 agggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtgattagggaatgattagaggaca 285  Q
    ||||||||  |||||||||||||| |||| |  || |||||||||| |||||||||||||  || ||||||||||||  | ||||||||||    
T  39194160 agggtgaaactaagtcacccttatataggtgcacgtgagaataaccgtctccgaaatatgtggcgtgtgattagggagcggttagaggaca 39194250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 2674605 - 2674477
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcg-cgagaataaccatctccgaaatatgcagcatgtg 263  Q
    ||||||| |||||||||||||| |||||||||| |||||| |  |||||||||| || ||| |||  ||| |||||| |||||| | | ||| || ||||    
T  2674605 aaagtgttgtgaaaagtgaatcataccttgaggatgaagtaagttcacccttatataagcgcgcgttgagcataaccgtctccggattttgcggcgtgtg 2674506  T
Q  264 attagggaatgattagaggacatgtgtagg 293  Q
    ||||||||  | |||||||||| |||||||    
T  2674505 attagggacag-ttagaggacacgtgtagg 2674477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 50151823 - 50151766
Alignment:
Q  177 aaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgaga 234  Q
    ||||| |||| ||||||||||||||||  ||||||||||||| |||||||||| ||||    
T  50151823 aaagtaaatcataccttgagggtgaagcaaagtcacccttatataggcgtgcgtgaga 50151766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 285
Target Start/End: Original strand, 10981926 - 10982044
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtga 264  Q
    ||||||||| |||||||||||| ||| ||| ||| |||  |||||||||||||| ||| |||| | ||||||||||  |||||  |||||| || |||||    
T  10981926 aaagtgtgg-gaaaagtgaatcatacattg-gggagaaactaagtcacccttatatagacgtgtgtgagaataaccgcctccgggatatgcggcttgtga 10982023  T
Q  265 ttagggaatgattagaggaca 285  Q
    |||||||  | ||||||||||    
T  10982024 ttagggagcggttagaggaca 10982044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 26894743 - 26894679
Alignment:
Q  175 gaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataac 239  Q
    ||||||||||||||||||||||||| |||  | ||||| ||||| |||||||| | |||||||||    
T  26894743 gaaaagtgaatcgtaccttgagggttaagaaatgtcacacttatataggcgtgtgtgagaataac 26894679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 227
Target Start/End: Complemental strand, 17121677 - 17121616
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtg 227  Q
    ||||||||| |||||||||||  ||||||| |||||||||||| |||||||||| ||| ||||    
T  17121677 aaagtgtgg-gaaaagtgaataataccttgggggtgaagttaaatcacccttatatagacgtg 17121616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 19643770 - 19643826
Alignment:
Q  173 gtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcg 229  Q
    |||||||||||||| |||||||||||||||   |  |||||||||| ||||||||||    
T  19643770 gtgaaaagtgaatcataccttgagggtgaaacaagttcacccttatataggcgtgcg 19643826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 34573025 - 34572897
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtga 264  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| | | |||||||| |||||||   ||||||  | |||||    
T  34573025 aaagtgtggtgaaaagtgaatcatacattgagggtgaagttaagtcacccttatataggcgcgtgtgagaataatcatctccatgatatgcgacgtgtga 34572926  T
Q  265 ttagggaatgattagaggacatgtgtagg 293  Q
    ||||||| ||||||||||||| |||||||    
T  34572925 ttagggagtgattagaggacacgtgtagg 34572897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 72 - 285
Target Start/End: Original strand, 34187263 - 34187474
Alignment:
Q  72 gtggtgatgagtcttcgtggtggaacgaaaggtggctacttgcatgttaacagtccaacattcaaattggtaatgaaactaaaaaagagtgtt---aaag 168  Q
    |||||||| |||||| | |||||||||||||||| || |   || |||| ||  |||||| |||| |  |||||| |||| | |||||||||    ||||    
T  34187263 gtggtgataagtctttgcggtggaacgaaaggtgtctgcagacacgttagcacaccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaag 34187362  T
Q  169 tgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtgattag 268  Q
    |||||||||| |||||| |||||||||||||||||     |||||||||| ||||| | || |||||||||| ||||||  ||||||||| |||||||||    
T  34187363 tgtggtgaaa-gtgaattgtaccttgagggtgaag----ctcacccttatataggcatacgtgagaataaccgtctccgggatatgcagcgtgtgattag 34187457  T
Q  269 ggaatgattagaggaca 285  Q
    |||   |||||||||||    
T  34187458 ggatcaattagaggaca 34187474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 165 - 324
Target Start/End: Complemental strand, 3404893 - 3404731
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtga 264  Q
    ||||||| ||||||| |||||| |||||||||||||||||||| | |||||||| |||||| | | || ||||||| |||| |   | |||||| |||||    
T  3404893 aaagtgttgtgaaaaatgaatcataccttgagggtgaagttaaattacccttatataggcgcgtgtgaaaataaccgtctctgggttttgcagcgtgtga 3404794  T
Q  265 ttagggaatgattagaggacatgtgtag---gattgacgtgcggaggcgtgctcgagtgtgat 324  Q
    ||| ||| || |||||||||| ||||||   ||||  || | ||||||||||||| |||||||    
T  3404793 ttaaggagtggttagaggacacgtgtagagtgattctcgcgtggaggcgtgctcgggtgtgat 3404731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 12203669 - 12203616
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    ||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  12203669 aaagtgttgtgaaaagtgaatcatactttgagggtgaagttaagtcacccttat 12203616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 15480372 - 15480314
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctagg 223  Q
    ||||||| |||||||||||||| ||||||||| |||||| |||||||||||||| ||||    
T  15480372 aaagtgttgtgaaaagtgaatcataccttgagagtgaagctaagtcacccttatatagg 15480314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 22692153 - 22692227
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataacc 240  Q
    ||||||||| |||||||||||| || ||||||||||||| ||||||||| |||| |||| ||| | ||||||||||    
T  22692153 aaagtgtgg-gaaaagtgaatcataacttgagggtgaagctaagtcacctttatataggtgtgtgtgagaataacc 22692227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 18567421 - 18567369
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    ||||||||| ||||||||||||  |||||| |||||||||||||||||||||||    
T  18567421 aaagtgtgg-gaaaagtgaatctaaccttgggggtgaagttaagtcacccttat 18567369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 9292050 - 9291991
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    ||||||||| |||||||||||| |||||||||||||||| ||| ||||| |||| ||||||    
T  9292050 aaagtgtgg-gaaaagtgaatcataccttgagggtgaagctaactcacctttatataggcg 9291991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 19305524 - 19305576
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcaccctta 217  Q
    ||||||| |||||||||||||| ||||||||||||||||  | ||||||||||    
T  19305524 aaagtgttgtgaaaagtgaatcataccttgagggtgaagcaaggtcaccctta 19305576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Original strand, 20148375 - 20148434
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggc 224  Q
    ||||||| |||||||||||||| |||||||| |||||||  | ||||||||||| |||||    
T  20148375 aaagtgttgtgaaaagtgaatcataccttgatggtgaagcaaggtcacccttatataggc 20148434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 22184453 - 22184394
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggc 224  Q
    ||||||| |||||||||||||| |||||||| |||||||  | ||||||||||| |||||    
T  22184453 aaagtgttgtgaaaagtgaatcataccttgatggtgaagcaaggtcacccttatataggc 22184394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 689889 - 689856
Alignment:
Q  164 taaagtgtggtgaaaagtgaatcgtaccttgagg 197  Q
    |||||||| |||||||||||||||||||||||||    
T  689889 taaagtgttgtgaaaagtgaatcgtaccttgagg 689856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 218
Target Start/End: Complemental strand, 9277320 - 9277279
Alignment:
Q  177 aaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    |||||||||| |||||||||||||||| ||| ||||||||||    
T  9277320 aaagtgaatcataccttgagggtgaagctaactcacccttat 9277279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 10115708 - 10115663
Alignment:
Q  173 gtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    |||||||||||||| ||||| |||||||||| ||||||| ||||||    
T  10115708 gtgaaaagtgaatcatacctcgagggtgaagctaagtcagccttat 10115663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 17380156 - 17380221
Alignment:
Q  164 taaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcg 229  Q
    |||||||| |||||||||||||| |||||| ||| ||| |  | ||||||||||| ||||||||||    
T  17380156 taaagtgttgtgaaaagtgaatcttaccttcaggttgacgcaaggtcacccttatataggcgtgcg 17380221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 2393519 - 2393452
Alignment:
Q  175 gaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctc 245  Q
    |||||||||||| ||| |||||||||    |||||||||||||| |||||||| |  ||||||||||||||    
T  2393519 gaaaagtgaatcatacattgagggtgc---taagtcacccttatataggcgtgtgtaagaataaccatctc 2393452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 34064228 - 34064315
Alignment:
Q  141 gtaatgaaactaaaaaagagtgt-taa--agtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    ||||||||||||| ||||||||| |||  ||||| |||||||||||   |||||||||||||||||  |  |||||||||| ||||||    
T  34064228 gtaatgaaactaagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatataggcg 34064315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 70 - 223
Target Start/End: Complemental strand, 45258281 - 45258125
Alignment:
Q  70 tggtggtgatgagtcttcgtggtggaacgaaaggtggctacttgcatgttaacagtccaacattcaaattggtaatgaaactaaaaaagagtgtt---aa 166  Q
    |||||| |||||||||||| ||||||||||||| || || |  ||| ||||||| |||||   |||| |  ||||||||||||| ||||| |||    ||    
T  45258281 tggtggcgatgagtcttcgcggtggaacgaaagatgtctgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaa 45258182  T
Q  167 agtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctagg 223  Q
    ||||| |||||||||||||| ||||||||||||||||  ||||||||||||| ||||    
T  45258181 agtgttgtgaaaagtgaatcataccttgagggtgaagcaaagtcacccttatatagg 45258125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 41933808 - 41933860
Alignment:
Q  18 aaaacaggtaccaaaatagtgttgatgatatgggtggcaatgttgtcgagttt 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41933808 aaaacaggtaccaaaatagtgttgatgatatgggtggcaatgttgttgagttt 41933860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 77 - 229
Target Start/End: Original strand, 36267467 - 36267622
Alignment:
Q  77 gatgagtcttcgtggtggaacgaaaggtggctacttgcatgttaacagtccaacattcaaattggtaatgaaactaaaaaagagtgt---taaagtgtgg 173  Q
    ||||||||||||  |||||| |||||||| || | |||||||||||| ||||||  |||| |  ||||||||||| | |||||||||    |||| || |    
T  36267467 gatgagtcttcgcagtggaatgaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttg 36267566  T
Q  174 tgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcg 229  Q
    ||||||||||||| ||||||||||||||||  |  |||||||||| ||| ||||||    
T  36267567 tgaaaagtgaatcataccttgagggtgaagcaagttcacccttatatagacgtgcg 36267622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 45714964 - 45715106
Alignment:
Q  77 gatgagtcttcgtggtggaacgaaaggtggctacttgcatgttaacagtccaacattcaaattggtaatgaaactaaaaaagagtgtt---aaagtgtgg 173  Q
    ||||||||||| |||||||||||||||||  | |  ||| |||| || ||||||  |||| |  ||||||||||| | |||||||||    |||||||||    
T  45714964 gatgagtcttcctggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtgg 45715063  T
Q  174 tgaaaagtgaatcgtaccttgagggtgaagttaagtcaccctt 216  Q
    |||||| |||||| |||||||| ||||||| ||||||||||||    
T  45715064 tgaaaattgaatcataccttgaaggtgaagctaagtcaccctt 45715106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 23257842 - 23257923
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccg 247  Q
    ||||||||| ||||||||||| ||||||||||||||||   | ||||||||||| |||||||| | |||||||||| ||||||    
T  23257842 aaagtgtgg-gaaaagtgaattgtaccttgagggtgaatcaaggtcacccttatataggcgtgtgtgagaataaccgtctccg 23257923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 27846550 - 27846501
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcaccc 214  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||||||||||    
T  27846550 aaagtgttgtgtaaagtgaattgtaccttgagggtgaagttaagtcaccc 27846501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 3586423 - 3586483
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    ||||||| |||||||||||||| ||||||||||||||||  |  |||||||||| ||||||    
T  3586423 aaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatataggcg 3586483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 17672033 - 17672111
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctc 245  Q
    ||||||||| |||||||||||| ||||||| |||||||| |||||||||||||  ||||||||   |||||||||| ||||    
T  17672033 aaagtgtgg-gaaaagtgaatcataccttg-gggtgaagctaagtcacccttaaataggcgtgtatgagaataaccgtctc 17672111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 17658030 - 17658099
Alignment:
Q  175 gaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctc 245  Q
    |||||||||||| ||||||| |||||||| |||||||||||||  ||||||||   |||||||||| ||||    
T  17658030 gaaaagtgaatcataccttg-gggtgaagctaagtcacccttaaataggcgtgtatgagaataaccgtctc 17658099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 245
Target Start/End: Original strand, 17626971 - 17627039
Alignment:
Q  176 aaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctc 245  Q
    ||||||||||| ||||||| |||||||| |||||||||||||  ||||||||   |||||||||| ||||    
T  17626971 aaaagtgaatcataccttg-gggtgaagctaagtcacccttaaataggcgtgtatgagaataaccgtctc 17627039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 27933775 - 27933704
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaata 237  Q
    ||||||||| |||||||||||| |||||||  ||||||||||||| ||| |||| ||| |||| | |||||||    
T  27933775 aaagtgtgg-gaaaagtgaatcataccttggaggtgaagttaagttacctttatatagacgtgtgtgagaata 27933704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 9e-19; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 30477701 - 30477777
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcg-cgagaataacc 240  Q
    ||||||| |||||||||||||| ||||||||||||||||| | ||||||||||| |||||||||| |||||||||||    
T  30477701 aaagtgttgtgaaaagtgaatcataccttgagggtgaagtaatgtcacccttatataggcgtgcgtcgagaataacc 30477777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 71 - 289
Target Start/End: Original strand, 13754721 - 13754942
Alignment:
Q  71 ggtggtgatgagtcttcgtggtggaacgaaaggtggctacttgcatgttaacagtccaacattcaaattggtaatgaaactaaaaaagagtgtt---aaa 167  Q
    |||||||| |||||||||   ||| |||||||||| || || ||| ||||||| | || |  |||| |  ||||||||||| | |||||||||    |||    
T  13754721 ggtggtgaagagtcttcgcaatgggacgaaaggtgcctgctggcacgttaacactacatcgctcaagtcagtaatgaaactgagaaagagtgtgtagaaa 13754820  T
Q  168 gtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtgatta 267  Q
    |||| ||| |||||||||| |||||||||||||||| |||||||| ||||| |||||  ||  |||||||||| ||| || | | ||| || ||||||||    
T  13754821 gtgttgtgtaaagtgaatcctaccttgagggtgaagctaagtcactcttatataggcacgcatgagaataaccgtcttcggattttgcggcgtgtgatta 13754920  T
Q  268 gggaatgattagaggacatgtg 289  Q
    | ||| | |||||||| |||||    
T  13754921 gtgaacggttagaggaaatgtg 13754942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 23497195 - 23497134
Alignment:
Q  164 taaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    |||||||| ||||| |||||||| |||||||||||| |||  ||||||||||||| ||||||    
T  23497195 taaagtgttgtgaatagtgaatcataccttgagggttaagcaaagtcacccttatataggcg 23497134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 13764951 - 13765124
Alignment:
Q  70 tggtggtgatgagtcttcgtggtggaacgaaaggtggctacttgcatgttaacagtccaacattcaaattggtaatgaaactaaaaaagagtgtt---aa 166  Q
    ||||||||| ||||||||| ||||  |||||||||| || |  ||| ||||| | |||||  ||||| |  ||||||||||| | |||||||||    ||    
T  13764951 tggtggtgaagagtcttcgcggtgtgacgaaaggtgtctgcaggcacgttaagactccaatgttcaagtgagtaatgaaactgagaaagagtgtgtagaa 13765050  T
Q  167 agtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataacc 240  Q
    ||||| ||| |||||||||  |  ||||| ||||||| |||||||||||||  || ||| ||| ||||||||||    
T  13765051 agtgttgtgtaaagtgaataatgtcttgaaggtgaagctaagtcacccttaaataagcgcgcgtgagaataacc 13765124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 204
Target Start/End: Original strand, 24507517 - 24507556
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagt 204  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  24507517 aaagtgttgtgaaaagtgaatcataccttgagggtgaagt 24507556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Complemental strand, 6928121 - 6928084
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaa 202  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  6928121 aaagtgttgtgaaaagtgaatcataccttgagggtgaa 6928084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 105
Target Start/End: Complemental strand, 17319744 - 17319716
Alignment:
Q  77 gatgagtcttcgtggtggaacgaaaggtg 105  Q
    |||||||||||||||||||||||||||||    
T  17319744 gatgagtcttcgtggtggaacgaaaggtg 17319716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 177 - 225
Target Start/End: Original strand, 23269306 - 23269354
Alignment:
Q  177 aaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    |||||||||||||||||||||||||||  | ||||||| ||| ||||||    
T  23269306 aaagtgaatcgtaccttgagggtgaagcaatgtcacccatatataggcg 23269354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 27083269 - 27083195
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataac 239  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||   |||||| ||| |||||||||    
T  27083269 aaagtgttgtgaaaagtgaatcataccttgagggtgaagttaagtcacccttgcataggcgcgcgtgagaataac 27083195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 176 - 291
Target Start/End: Complemental strand, 29279057 - 29278942
Alignment:
Q  176 aaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtgattagggaatga 275  Q
    ||||| ||||| || ||||||||| |||||||||||||||||| ||||||||   ||||||||||  ||| |  ||||| ||| ||||||||||||  |     
T  29279057 aaaagcgaatcatatcttgagggtaaagttaagtcacccttatataggcgtgtctgagaataaccgcctctgggatatggagcgtgtgattagggagcgg 29278958  T
Q  276 ttagaggacatgtgta 291  Q
    ||||||||||||||||    
T  29278957 ttagaggacatgtgta 29278942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 20025343 - 20025425
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccg 247  Q
    ||||||| ||| |||||||||| | |||||||||||||| || |||||||||||  ||||| ||| |||||||||| ||||||    
T  20025343 aaagtgttgtgtaaagtgaatcattccttgagggtgaagctaggtcacccttatacaggcgcgcgtgagaataaccgtctccg 20025425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 34493573 - 34493625
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcaccctta 217  Q
    ||||||| |||||||||||||| |||||||||||||||  |||||||||||||    
T  34493573 aaagtgttgtgaaaagtgaatcataccttgagggtgaaactaagtcaccctta 34493625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 4477258 - 4477330
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataa 238  Q
    ||||||||| || |||||||||| |||||| |||||||| |||||||||||||| ||||| || | ||||||||    
T  4477258 aaagtgtgg-gagaagtgaatcggaccttgggggtgaagctaagtcacccttatataggcatgtgtgagaataa 4477330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 285
Target Start/End: Original strand, 8938972 - 8939091
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccgaaatatgcagcatgtga 264  Q
    ||||||||| |||||||||||| ||| |||||||||||| ||||||||| |||| |||   || | |||||||||   |||||  |||||| || |||||    
T  8938972 aaagtgtgg-gaaaagtgaatcatacattgagggtgaagctaagtcaccgttatatagatttgtgtgagaataactgcctccgggatatgcggcgtgtga 8939070  T
Q  265 ttagggaatgattagaggaca 285  Q
    |||||||  | ||||||||||    
T  8939071 ttagggagcggttagaggaca 8939091  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 26994634 - 26994517
Alignment:
Q  168 gtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcg-cgagaataaccatctccgaaatatgcagcatgtgatt 266  Q
    |||| |||||||||||||| ||||||| ||||||||  | ||||||||||| |||||| |||  |||| ||||| ||| |||  | ||| || |||||||    
T  26994634 gtgttgtgaaaagtgaatcataccttgggggtgaagcaaggtcacccttatataggcgcgcgttgagagtaaccgtcttcgagttttgcggcgtgtgatt 26994535  T
Q  267 agggaatgattagaggaca 285  Q
    |||| | ||||||||||||    
T  26994534 aggg-acgattagaggaca 26994517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 202
Target Start/End: Original strand, 22903153 - 22903190
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaa 202  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  22903153 aaagtgttgtgaaaagtgaatcataccttgagggtgaa 22903190  T

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Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 149217 - 149281
Alignment:
Q  176 aaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataacc 240  Q
    ||||||||||| ||||||| ||||||||||||||||||||||| |||| ||| || |||||||||    
T  149217 aaaagtgaatcataccttgggggtgaagttaagtcacccttatataggtgtgtgctagaataacc 149281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 8019018 - 8019090
Alignment:
Q  175 gaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataaccatctccg 247  Q
    |||||||||||| ||||||| |||||||| || ||||||||||| |||||||| | |||||||||| ||||||    
T  8019018 gaaaagtgaatcataccttgggggtgaagctatgtcacccttatataggcgtgtgtgagaataaccgtctccg 8019090  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 2140979 - 2140903
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgcgcgagaataacca 241  Q
    ||||||| ||| |||||||| | |||||||||||||||| ||||||||||||||  || || ||| |||||||||||    
T  2140979 aaagtgttgtggaaagtgaaccataccttgagggtgaagctaagtcacccttataaagacgcgcgtgagaataacca 2140903  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 16030455 - 16030515
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    ||||||| |||||||||||||| ||||||||||| |||| |||| ||||||||| ||||||    
T  16030455 aaagtgttgtgaaaagtgaatcataccttgagggcgaagctaagccacccttatataggcg 16030515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 5671830 - 5671883
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    ||||||| |||||||||||||| ||| |||| |||||||||||||||| |||||    
T  5671830 aaagtgttgtgaaaagtgaatcatacattgaaggtgaagttaagtcactcttat 5671883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 18246212 - 18246255
Alignment:
Q  175 gaaaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    ||||||||| || |||||||||||||||| ||||||||||||||    
T  18246212 gaaaagtgattcataccttgagggtgaagataagtcacccttat 18246255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 197
Target Start/End: Original strand, 12177368 - 12177478
Alignment:
Q  90 ggtggaacgaaaggtggctacttgcatgttaacagtccaacattcaaattggtaatgaaactaaaaaagagtgt---taaagtgtggtgaaaagtgaatc 186  Q
    |||||||||||||||| |||| |||| |||| || ||| ||| |||| |  |||||| |||| | |||||||||    ||||||| |||||||||||||     
T  12177368 ggtggaacgaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatt 12177467  T
Q  187 gtaccttgagg 197  Q
     ||||||||||    
T  12177468 ataccttgagg 12177478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 32875492 - 32875448
Alignment:
Q  181 tgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    ||||| ||||||||||||||| ||| |||||||||||| ||||||    
T  32875492 tgaattgtaccttgagggtgacgttgagtcacccttatataggcg 32875448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 9801115 - 9801056
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggc 224  Q
    ||||||| |||||||||||||| ||||||||||||||||  | ||||||||||| |||||    
T  9801115 aaagtgttgtgaaaagtgaatcataccttgagggtgaagcaatgtcacccttatataggc 9801056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 16704462 - 16704522
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    ||||||| |||||||||||||| ||||||||||||||||  |  |||||||||| ||||||    
T  16704462 aaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatataggcg 16704522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 30606988 - 30607048
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    ||||||| |||||||||||||  ||||||||||||||||| | | ||||||||| ||||||    
T  30606988 aaagtgttgtgaaaagtgaattataccttgagggtgaagtaaggccacccttatataggcg 30607048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 218
Target Start/End: Original strand, 6129506 - 6129549
Alignment:
Q  175 gaaaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||    
T  6129506 gaaaagtgaatcgtatcttgggggtgaagctaagtcacccttat 6129549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 223
Target Start/End: Complemental strand, 21342318 - 21342260
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctagg 223  Q
    ||||||| |||||||||||||| ||| ||||||||||||| | || |||||||| ||||    
T  21342318 aaagtgttgtgaaaagtgaatcatacattgagggtgaagtaaggttacccttatatagg 21342260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 28715520 - 28715482
Alignment:
Q  164 taaagtgtggtgaaaagtgaatcgtaccttgagggtgaa 202  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  28715520 taaagtgttgtgaaaagtgaatcataccttgagggtgaa 28715482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 2311865 - 2311812
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    ||||||| |||||| ||||||| ||||||||||||||||  | |||||||||||    
T  2311865 aaagtgttgtgaaaggtgaatcataccttgagggtgaagcaatgtcacccttat 2311812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 8122938 - 8122893
Alignment:
Q  173 gtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    |||||||||||||| ||||||||||||||||  | |||||||||||    
T  8122938 gtgaaaagtgaatcataccttgagggtgaagcaatgtcacccttat 8122893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 12375374 - 12375345
Alignment:
Q  172 ggtgaaaagtgaatcgtaccttgagggtga 201  Q
    ||||||||||||||||||||||||||||||    
T  12375374 ggtgaaaagtgaatcgtaccttgagggtga 12375345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 68833 - 68774
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggc 224  Q
    ||||||| |||||||||||||| ||||||||||| ||||  | ||||||||||| |||||    
T  68833 aaagtgttgtgaaaagtgaatcataccttgagggagaagcaaggtcacccttatataggc 68774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 95841 - 95782
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggc 224  Q
    ||||||| |||||||||||||| |||||| |||||||||  | ||||||||||| |||||    
T  95841 aaagtgttgtgaaaagtgaatcataccttcagggtgaagcaacgtcacccttatataggc 95782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 15461 - 15423
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaag 203  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  15461 aaagtgttgtgaaaagtgaatcataccttgagggtgaag 15423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 26762942 - 26762904
Alignment:
Q  165 aaagtgtggtgaaaagtgaatcgtaccttgagggtgaag 203  Q
    ||||||| |||||||||||||| ||||||||||||||||    
T  26762942 aaagtgttgtgaaaagtgaatcataccttgagggtgaag 26762904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 9135384 - 9135339
Alignment:
Q  173 gtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttat 218  Q
    |||||||||||||| ||||||||||||||||  || ||||||||||    
T  9135384 gtgaaaagtgaatcataccttgagggtgaagcaaattcacccttat 9135339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 121043 - 120982
Alignment:
Q  164 taaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcg 225  Q
    |||||||| |||||||||||   |||||||||||||||||  || |||||||||| ||||||    
T  121043 taaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaaattcacccttatataggcg 120982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 13955 - 14045
Alignment:
Q  141 gtaatgaaactaaaaaagagtgtt---aaagtgtggtgaaaagtgaatcgtaccttgagggtgaagttaagtcacccttatctaggcgtgc 228  Q
    ||||||||||| | |||||||||    ||||||| |||| ||||||||| ||||||||||||||||  |  |||||||||| |||| ||||    
T  13955 gtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaatcataccttgagggtgaagcaagatcacccttatataggtgtgc 14045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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