View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8650_low_32 (Length: 242)

Name: NF8650_low_32
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8650_low_32
NF8650_low_32
[»] chr2 (7 HSPs)
chr2 (1-224)||(2350949-2351172)
chr2 (3-224)||(2303375-2303596)
chr2 (9-224)||(2293768-2293983)
chr2 (7-224)||(2310097-2310314)
chr2 (3-224)||(2321076-2321298)
chr2 (3-224)||(2326930-2327151)
chr2 (3-224)||(2330645-2330866)
[»] chr8 (1 HSPs)
chr8 (96-211)||(41127050-41127165)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 2350949 - 2351172
Alignment:
Q  1 caaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2350949 caaatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcgtgatggaaatggagagaaggtggaagtgaaaga 2351048  T
Q  101 ggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2351049 ggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttgccacacgcggtgacagag 2351148  T
Q  201 gatgtgctttttaatggttatttg 224  Q
    |||||||||||||| |||||||||    
T  2351149 gatgtgctttttaacggttatttg 2351172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 2303375 - 2303596
Alignment:
Q  3 aatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagagg 102  Q
    |||||||| |||||||| || |||||  ||||||||||||| |||||| ||||||||||||||  |||||  ||||||||||||| ||||||||||||||    
T  2303375 aatttggttaagtacccagaagtgcagaggaggcttgtggaggagattcgggaggtgatgggtggtgatgagaatggagagaaggaggaagtgaaagagg 2303474  T
Q  103 aagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagagga 202  Q
    |||| ||||||||||||  |||| |||||||||| ||||||||||||||||||||||||||||||||||||  | |||| ||||||||||||| ||||||    
T  2303475 aagaattgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatccaccggggcattttctgttgccacacgcggtgaaagagga 2303574  T
Q  203 tgtgctttttaatggttatttg 224  Q
    |||| |||| || |||||||||    
T  2303575 tgtggttttgaacggttatttg 2303596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 224
Target Start/End: Original strand, 2293768 - 2293983
Alignment:
Q  9 gtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagaggaagatt 108  Q
    ||||||||||| || ||||| |||||||||||||| |||||| ||||||||||||||  ||||| |||||||||||||| |||||||||||||||||| |    
T  2293768 gtgaagtacccagaagtgcaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaagact 2293867  T
Q  109 tgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagaggatgtgct 208  Q
    |||||||||||  |||| |||| ||||||||||||||||||||||||||||||||||||||| |   |  ||| ||||||||||||| |||||||||| |    
T  2293868 tgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccggggaaatttccgttgccacacgcggtgaaagaggatgtggt 2293967  T
Q  209 ttttaatggttatttg 224  Q
    |||  | |||||||||    
T  2293968 tttggacggttatttg 2293983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 2310097 - 2310314
Alignment:
Q  7 tggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagaggaaga 106  Q
    ||||||||||||| || ||| | |||||||||||||| |||||| ||||||||||||||  ||||| |||||||||||||| ||||||||||||||||||    
T  2310097 tggtgaagtacccagaagtgaaggggaggcttgtggaggagattcgggaggtgatgggtggtgatgaaaatggagagaaggaggaagtgaaagaggaaga 2310196  T
Q  107 tttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagaggatgtg 206  Q
     ||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||||| |   |  ||| ||||||||||||| ||||||||||    
T  2310197 cttgcagaaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatccatcggggaaatttccgttgccacacgcggtgaaagaggatgtg 2310296  T
Q  207 ctttttaatggttatttg 224  Q
     ||||  | |||||||||    
T  2310297 gttttggacggttatttg 2310314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 2321076 - 2321298
Alignment:
Q  3 aatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagagg 102  Q
    ||||||||||||||||| || ||||| |||||||||||||| |||||| | |||||||||| |  |||||  ||||||||||||| ||||||||||||||    
T  2321076 aatttggtgaagtacccggaagtgcaggggaggcttgtggaggagattcgtgaggtgatggttagtgatgacaatggagagaaggaggaagtgaaagagg 2321175  T
Q  103 aagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccacc-ggggcataatgtgttaccacacgcggtgacagagg 201  Q
    || | ||||||||||||   ||| |||| || ||||||||||||||| |||||||||||||||| |||||||  ||||||  ||||| |||||| |||||    
T  2321176 aaaacttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatccaccaggggcattttgtgttggcacacacggtgaaagagg 2321275  T
Q  202 atgtgctttttaatggttatttg 224  Q
    ||||| |||| || |||||||||    
T  2321276 atgtggttttgaacggttatttg 2321298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 2326930 - 2327151
Alignment:
Q  3 aatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagagg 102  Q
    ||||||||||||||||| ||||| ||| ||||||||||| | |||||||||||| | ||||||  ||||||   || |||||||| ||||||||||||||    
T  2326930 aatttggtgaagtacccggacgttcaaaggaggcttgtgcaggagattagggagttcatgggtggtgatggtgttgtagagaaggaggaagtgaaagagg 2327029  T
Q  103 aagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagagga 202  Q
    |||| ||||| ||||||  |||| |||| ||||||||||||||||||||||||||||||||||| ||||||  |||||| || || || ||||  || ||    
T  2327030 aagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccagggcattttgtgttgcctcatgcagtgagcgatga 2327129  T
Q  203 tgtgctttttaatggttatttg 224  Q
    |||| |||| ||||||||||||    
T  2327130 tgtggttttgaatggttatttg 2327151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 3 - 224
Target Start/End: Original strand, 2330645 - 2330866
Alignment:
Q  3 aatttggtgaagtaccccgacgtgcaagggaggcttgtggacgagattagggaggtgatgggtcatgatggaaatggagagaaggtggaagtgaaagagg 102  Q
    ||||||||||||||||| ||||| || |||| ||||||||| |||||||  ||||||||||||   ||||    ||||||||||| ||||||||||||||    
T  2330645 aatttggtgaagtacccggacgttcaggggaagcttgtggaggagattacagaggtgatgggtggcgatgatgctggagagaaggaggaagtgaaagagg 2330744  T
Q  103 aagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtgacagagga 202  Q
    |||| ||||| ||||||  |||| |||| || |||||||||||||||||||||||||||||||| ||||||   ||||| || ||||| ||||  |||||    
T  2330745 aagacttgcataaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcatttcgtgttgcctcacgcagtgagcgagga 2330844  T
Q  203 tgtgctttttaatggttatttg 224  Q
    |||| |||| ||||||||||||    
T  2330845 tgtggttttgaatggttatttg 2330866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 41127050 - 41127165
Alignment:
Q  96 aaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttaccacacgcggtga 195  Q
    ||||||||||| |||||||| ||    ||||| || |||||| ||||||||||| ||||| |||| |||||||||||   |||||| || || |||||||    
T  41127050 aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggcactttgtgttgccccatgcggtga 41127149  T
Q  196 cagaggatgtgctttt 211  Q
      ||||||||| ||||    
T  41127150 aggaggatgtggtttt 41127165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University