View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_33 (Length: 242)
Name: NF8650_low_33
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 2693770 - 2693613
Alignment:
| Q |
68 |
aaagatatttatgaaatagtttttgaaaagggaaatgctatttaaagcaacagatttgttattatatggttaattaaactacaacacaatcaaataccgt |
167 |
Q |
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| T |
2693770 |
aaagacatttatgaaatagtttttgaaaagggaaatgctatttaaagcagcagatttgttattatatggttaattaaactacaacacaatcaaataccgt |
2693671 |
T |
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| Q |
168 |
aaacctcgtaaaataataatcaaataccgtnnnnnnngacaatcaaatgctctctgtg |
225 |
Q |
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| T |
2693670 |
aaacctctcaaaataataatcaaataccgtaaaaaaagacaatcaaatgctctctgtg |
2693613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 45924577 - 45924608
Alignment:
| Q |
16 |
tataagctcaattaatcatctagtaagttctg |
47 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45924577 |
tataagctcaattaatcatctagtaagttctg |
45924608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 47
Target Start/End: Original strand, 45936525 - 45936556
Alignment:
| Q |
16 |
tataagctcaattaatcatctagtaagttctg |
47 |
Q |
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| T |
45936525 |
tataagctcaattaatcatctagtaagttctg |
45936556 |
T |
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