View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_35 (Length: 240)
Name: NF8650_low_35
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_35 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 5055312 - 5055536
Alignment:
| Q |
16 |
cagagaaaggaggaccaaaagcacctccaaggaataaaatggctctctatgaacaattcagcatcccttcacaaagctttgcatcatcaggatcaggatc |
115 |
Q |
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| T |
5055312 |
cagagaaaggaggaccaaaagcacctccaaggaataaaatggctctctatgaacaattcagcatcccttcacaaagttttgcatcatcaggatcaggatc |
5055411 |
T |
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| Q |
116 |
attgtttactctccctctaagaaattgtacagttcctacaacatcaagccatgtgagtcatgtagtagttctttaaattttacaatgtaaccaatttttg |
215 |
Q |
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| T |
5055412 |
attgtttactctccctctaagaaattgtacagttcctacaacatcaagccatgtgagtcatgtagtagttctttaaattttacaatgtaaccaatttttg |
5055511 |
T |
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| Q |
216 |
taccataagtatgagtcttatcttt |
240 |
Q |
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| T |
5055512 |
taccataagtatgagtcttatcttt |
5055536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 5052166 - 5052223
Alignment:
| Q |
17 |
agagaaaggaggaccaaaagcacctccaaggaataaaatggctctctatgaacaattc |
74 |
Q |
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|||||||||||| |||||| |||| |||| |||||||||||||||||| ||||||||| |
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| T |
5052166 |
agagaaaggagggccaaaatcacccccaacgaataaaatggctctctacgaacaattc |
5052223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 47903758 - 47903815
Alignment:
| Q |
16 |
cagagaaaggaggaccaaaagcacctccaaggaataaaatggctctctatgaacaatt |
73 |
Q |
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| T |
47903758 |
cagagaagggagggccaagagcacctcctaggaataaaatggctctctatgagcaatt |
47903815 |
T |
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