View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_36 (Length: 239)
Name: NF8650_low_36
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45060135 - 45060353
Alignment:
| Q |
1 |
atgctgagattgtgactgtgacattgatttctggtaatttagaatgtggggactatacatacagttacattacattaccattgattgattgaataattag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45060135 |
atgctgagattgtgactgtgacattgatttctggtaatttagaatgtgggaactatac----agttacattacattaccattgattgattgaataattag |
45060230 |
T |
|
| Q |
101 |
tactacacgtgcacgcgcgtactttgacatagacaaatattgacaaacaacttatctgcattttaccaactatactaagctcctttgtacaaatcatgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45060231 |
tactacacgtgcacgcgcgtactttgacatagacaaatattgacaaacaacttatctgcattttacctactatactaagctcctttgtacaaatcatgaa |
45060330 |
T |
|
| Q |
201 |
tcacaaattcttctaaccctttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
45060331 |
tcacaaattcttctaaccctttt |
45060353 |
T |
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