View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_39 (Length: 229)
Name: NF8650_low_39
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 37377010 - 37377224
Alignment:
| Q |
1 |
agtatgtatcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagtttgcttagatggttctacaaaacgaaaagatacttcca |
100 |
Q |
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| T |
37377010 |
agtatgtatcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagtttgcttagatggttctacaaaacgaaaagatacttcca |
37377109 |
T |
|
| Q |
101 |
aagatttgaagagagccacattttctccttgcagattggactcaaatcaggtatattgtagtccatatttcatgtacaagtgctgcatgtagctcttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37377110 |
aagatttgaagagagccacattttctccttgcagattggactcaaatcaggtatattgtagtccatatttcatgtacaagtgctgcatgtagctcttaat |
37377209 |
T |
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| Q |
201 |
ctttaggttgaaaat |
215 |
Q |
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||||||||||||||| |
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| T |
37377210 |
ctttaggttgaaaat |
37377224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 8 - 208
Target Start/End: Original strand, 37384383 - 37384583
Alignment:
| Q |
8 |
atcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagtttgcttagatggttctacaaaacgaaaagatacttccaaagattt |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||| |||||||||||| || |
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| T |
37384383 |
atcaagaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagattttgcttggatggttcttcaaaacgaaaagttacttccaaagagtt |
37384482 |
T |
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| Q |
108 |
gaagagagccacattttctccttgcagattggactcaaatcaggtatattgtagtccatatttcatgtacaagtgctgcatgtagctcttaatctttagg |
207 |
Q |
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| T |
37384483 |
caacaaaggcacattttctccttgcagattggatacaaatcaggtatattatagtccatatttcatgtataagtgtagcatgtgactcttaatctttagg |
37384582 |
T |
|
| Q |
208 |
t |
208 |
Q |
| |
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| |
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| T |
37384583 |
t |
37384583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 41228149 - 41227974
Alignment:
| Q |
1 |
agtatgtatcatgaggactatcgcgggaaacatcatttggttgcaaccaaccaaatgagagtttgcttagatggttctacaaaacgaaaagatacttcca |
100 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||||||| |||| |||| |||||||||||| |||||||| |
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| T |
41228149 |
agtaagtatcaagaggactatcgcgggaaacatcaattagttgcaaccaaccaaatgagactttgcttcgatgcttctccaaaacgaaaagttacttcca |
41228050 |
T |
|
| Q |
101 |
aagatttgaagagagccacattttctccttgcagattggactcaaatcaggtatattgtagtccatatttcatgta |
176 |
Q |
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| T |
41228049 |
aagagttcaagagaggcgcattttctccttgcagtttggattcaaatcaggtatgttgcagttcatatttgatgta |
41227974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 159
Target Start/End: Original strand, 39246890 - 39247018
Alignment:
| Q |
31 |
catcatttggttgcaaccaaccaaatgagagtttgcttagatggttctacaaaacgaaaagatacttccaaagatttgaagagagccacattttctcctt |
130 |
Q |
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|||||||| |||||| |||| |||| | | ||||||| |||| |||| ||| |||||| |||||| ||||| || | ||||| |||||||| || | |
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| T |
39246890 |
catcatttagttgcagtcaacaaaataaaattttgcttggatgcttctgcaagacgaaagcttacttctaaagagttcaggagaggtacattttcgccct |
39246989 |
T |
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| Q |
131 |
gcagattggactcaaatcaggtatattgt |
159 |
Q |
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|||| ||||| ||||||||||||| |||| |
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|
| T |
39246990 |
gcaggttggattcaaatcaggtatgttgt |
39247018 |
T |
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