View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8650_low_4 (Length: 516)

Name: NF8650_low_4
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8650_low_4
NF8650_low_4
[»] chr2 (1 HSPs)
chr2 (17-515)||(31379276-31379779)
[»] chr8 (2 HSPs)
chr8 (68-198)||(5646196-5646326)
chr8 (454-497)||(1880228-1880272)
[»] chr7 (2 HSPs)
chr7 (70-198)||(24840982-24841110)
chr7 (275-327)||(21904008-21904060)
[»] chr6 (1 HSPs)
chr6 (280-325)||(5467776-5467821)
[»] scaffold0717 (1 HSPs)
scaffold0717 (131-171)||(6698-6738)
[»] chr4 (4 HSPs)
chr4 (131-171)||(2847454-2847494)
chr4 (131-171)||(20581773-20581813)
chr4 (131-171)||(20582098-20582138)
chr4 (460-499)||(52298639-52298679)


Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 515
Target Start/End: Complemental strand, 31379779 - 31379276
Alignment:
Q  17 gaactaggctgtgaacattgcattcaaaagaaaaattatattgggaaaatcgaatgatttggatgtatcaatactctccttcgtatctgcgtcaagtaga 116  Q
    |||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31379779 gaactaggctgtgaacattgcattcaaaagaaaaatt-----gggaaaatcgaatgatttggatgtatcaatactctccttcgtatctgcgtcaagtaga 31379685  T
Q  117 tttgtagtccagggattgaaatcaattgaaggaggaactgttgtgacgattaaattcttcacctggacagattcactggtgacagaatgttccttaattg 216  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31379684 tttgtagtcccgggattgaaatcaattgaaggaggaactgttgtgacgattaaattcttcacctggacagattcaccggtgacagaatgttccttaattg 31379585  T
Q  217 gttaagcagatgcaacaacttcgtctgaagtcggaagtgcttcgc---tctctgtagcgttgatctcctcttgcaacagctcgagaatcctggcacacga 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||| ||||||||| ||||||||||||||| ||    
T  31379584 gttaagcagatgcaacaacttcgtctgaagtcggaagtgcttcgctcgtctctgtagcgttgatctcctctagcaacagcttgagaatcctggcacagga 31379485  T
Q  314 ctctcggatttctcatggataatcatacatacacgagttttgttaacggttcgagtcagccatggaatcaagatctccaaaaacaggcgaagaaga---- 409  Q
    |||||| ||||||  ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||        
T  31379484 ctctcgtatttcttgtggataatcatacatacgcaagttttgttaacggttcgagtcagccatggaatcaagatccccaacaacaggcgaaaaagaatgt 31379385  T
Q  410 --atcaacgctatcaccttgctgcaactgttgtggttcaaactccaaatgtcaccaatgtcacaaattctatgtca-ccaagtgctacccaaatcttctt 506  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31379384 tcatcaacgctatcaccttgctgcaactgttgtggttcaaactccaaatgtcaccaatgtcacaaattctatgtcacccaagtgctacccaaatcttctt 31379285  T
Q  507 catcatctg 515  Q
    |||||||||    
T  31379284 catcatctg 31379276  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 68 - 198
Target Start/End: Original strand, 5646196 - 5646326
Alignment:
Q  68 gaatgatttggatgtatcaatactctccttcgtatctgcgtcaagtagatttgtagtccagggattgaaatcaattgaaggaggaactgttgtgacgatt 167  Q
    ||||||||| ||||  |||||| ||| ||| ||||||||||||| ||||| ||| || | |  ||||||||| |||||||||||| ||||||| || |||    
T  5646196 gaatgattttgatgcgtcaatattcttctttgtatctgcgtcaaatagatctgtggttccgccattgaaatccattgaaggaggagctgttgtcacaatt 5646295  T
Q  168 aaattcttcacctggacagattcactggtga 198  Q
    |||||||||||||||||| |||||| |||||    
T  5646296 aaattcttcacctggacatattcaccggtga 5646326  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 497
Target Start/End: Complemental strand, 1880272 - 1880228
Alignment:
Q  454 aatgtcaccaatgtcacaaattctatgtca-ccaagtgctaccca 497  Q
    |||||||||| |||||| |||||||||||| ||||||||||||||    
T  1880272 aatgtcaccagtgtcaccaattctatgtcacccaagtgctaccca 1880228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 70 - 198
Target Start/End: Complemental strand, 24841110 - 24840982
Alignment:
Q  70 atgatttggatgtatcaatactctccttcgtatctgcgtcaagtagatttgtagtccagggattgaaatcaattgaaggaggaactgttgtgacgattaa 169  Q
    ||||||| ||||  |||||||||| ||| |||||| |||||| ||||| ||| || | |  ||||||||| ||| |||||||||||| ||| || |||||    
T  24841110 atgattttgatgcgtcaatactcttctttgtatctacgtcaaatagatatgtggttccgccattgaaatccattaaaggaggaactgctgtcacaattaa 24841011  T
Q  170 attcttcacctggacagattcactggtga 198  Q
    ||||||| |||||||| | |||| |||||    
T  24841010 attcttcccctggacatactcacgggtga 24840982  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 327
Target Start/End: Complemental strand, 21904060 - 21904008
Alignment:
Q  275 gatctcctcttgcaacagctcgagaatcctggcacacgactctcggatttctc 327  Q
    ||||||||||||||||| ||||||||| || || ||||||| ||| |||||||    
T  21904060 gatctcctcttgcaacaactcgagaatacttgcgcacgactgtcgaatttctc 21904008  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Original strand, 5467776 - 5467821
Alignment:
Q  280 cctcttgcaacagctcgagaatcctggcacacgactctcggatttc 325  Q
    |||||||||||||||||||||| || ||| |||||||||| |||||    
T  5467776 cctcttgcaacagctcgagaattcttgcatacgactctcgaatttc 5467821  T

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Target: scaffold0717 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 6738 - 6698
Alignment:
Q  131 attgaaatcaattgaaggaggaactgttgtgacgattaaat 171  Q
    ||||||||| |||||||||||||||||||| || |||||||    
T  6738 attgaaatccattgaaggaggaactgttgtcacaattaaat 6698  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 2847494 - 2847454
Alignment:
Q  131 attgaaatcaattgaaggaggaactgttgtgacgattaaat 171  Q
    ||||||||| |||||||||||||||||||| || |||||||    
T  2847494 attgaaatccattgaaggaggaactgttgtcacaattaaat 2847454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 20581813 - 20581773
Alignment:
Q  131 attgaaatcaattgaaggaggaactgttgtgacgattaaat 171  Q
    ||||||||| |||||||||||||||||||| || |||||||    
T  20581813 attgaaatccattgaaggaggaactgttgtcacaattaaat 20581773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 20582138 - 20582098
Alignment:
Q  131 attgaaatcaattgaaggaggaactgttgtgacgattaaat 171  Q
    ||||||||| |||||||||||||||||||| || |||||||    
T  20582138 attgaaatccattgaaggaggaactgttgtcacaattaaat 20582098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 460 - 499
Target Start/End: Original strand, 52298639 - 52298679
Alignment:
Q  460 accaatgtcacaaattctatgtca-ccaagtgctacccaaa 499  Q
    |||||||||||||||||||| ||| ||||||||||||||||    
T  52298639 accaatgtcacaaattctatatcacccaagtgctacccaaa 52298679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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