View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8650_low_40 (Length: 229)

Name: NF8650_low_40
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8650_low_40
NF8650_low_40
[»] chr6 (1 HSPs)
chr6 (1-229)||(20081818-20082045)
[»] chr3 (3 HSPs)
chr3 (1-136)||(31138994-31139127)
chr3 (1-133)||(8890885-8891017)
chr3 (80-136)||(11271780-11271836)
[»] chr4 (5 HSPs)
chr4 (33-136)||(8898894-8898997)
chr4 (1-136)||(36614431-36614566)
chr4 (81-130)||(21277119-21277168)
chr4 (86-130)||(17465337-17465381)
chr4 (100-136)||(12634143-12634179)
[»] chr5 (1 HSPs)
chr5 (80-136)||(26266828-26266884)
[»] chr1 (1 HSPs)
chr1 (34-136)||(45963055-45963157)
[»] chr2 (2 HSPs)
chr2 (1-136)||(24184896-24185031)
chr2 (100-136)||(16918160-16918196)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 20081818 - 20082045
Alignment:
Q  1 tttcatcataatgctaaattctaattatttcatatctatttctctattttataacgaaattatttctacgggcaatattttctttggtattttatgtacc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20081818 tttcatcataatactaaattctaattatttcatatctatttctctattttataacgaaattatttctacggacaatattttctttggtattttatgtacc 20081917  T
Q  101 ctttcagaatacataaacgtatctcaataataatcattgatttcttggtattatctcaccacttgccaaatgacaatcttacaagaaacggtataattaa 200  Q
     ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  20081918 tttt-agaatacataaacctatctcaataataatcattgatttcttggtattatctcaccacttgccaaatgacaaacttacaaaaaacggtataattaa 20082016  T
Q  201 ttcatttactctcctttccaatccaatga 229  Q
    ||||||||||||||||| |||||||||||    
T  20082017 ttcatttactctccttttcaatccaatga 20082045  T

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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 31138994 - 31139127
Alignment:
Q  1 tttcatcataatgctaaattctaattatttcatatctatttctctattttataacgaaattatttctacgggcaatattttctttggtattttatgtacc 100  Q
    ||||| |||||||||||||||||| |||| | |||| |||| ||||||| | || ||| | ||||||| || ||| || ||||||||||||||||||       
T  31138994 tttcaacataatgctaaattctaaatattccctatccattt-tctattt-agaatgaattcatttctaaggacaaaatgttctttggtattttatgtttt 31139091  T
Q  101 ctttcagaatacataaacgtatctcaataataatca 136  Q
    |||||| |||||||||||||||||||||||||||||    
T  31139092 ctttcataatacataaacgtatctcaataataatca 31139127  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 8891017 - 8890885
Alignment:
Q  1 tttcatcataatgctaaattctaattatttcatatctatttctctattttataacgaaattatttctacgggcaatattttctttggtattttatgtacc 100  Q
    ||||||||| ||||||||||||||  |||   |||||||||||||||||||||| ||| | ||||||| || |||  | |||||||||| || ||||  |    
T  8891017 tttcatcatgatgctaaattctaaacattctgtatctatttctctattttataatgaattcatttctaaggacaacgtgttctttggtaattcatgtttc 8890918  T
Q  101 ctttcagaatacataaacgtatctcaataataa 133  Q
    || ||| ||| ||| || ||||||||| |||||    
T  8890917 ctctcataattcatgaatgtatctcaacaataa 8890885  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 11271836 - 11271780
Alignment:
Q  80 ttctttggtattttatgtaccctttcagaatacataaacgtatctcaataataatca 136  Q
    ||||||||||||||||||  ||||| |||||| ||||| ||||||||||||||||||    
T  11271836 ttctttggtattttatgtttccttttagaatatataaatgtatctcaataataatca 11271780  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 8898997 - 8898894
Alignment:
Q  33 tatctatttctctattttataacgaaattatttctacgggcaatattttctttggtattttatgtaccctttcagaatacataaacgtatctcaataata 132  Q
    |||||||||||||||||||||| ||| | ||||||| || |||||| ||||||||||||| || |  ||| ||  ||||||| || ||||||||| ||||    
T  8898997 tatctatttctctattttataatgaattcatttctaaggacaatatattctttggtatttcatatttcctctcccaatacatgaatgtatctcaacaata 8898898  T
Q  133 atca 136  Q
    ||||    
T  8898897 atca 8898894  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 36614431 - 36614566
Alignment:
Q  1 tttcatcataatgctaaattctaattatttcatatctatttctctattttataacgaaatt-atttctacgggcaatattttctttggtattttatgtac 99  Q
    |||||||| ||||  ||||||||   ||||| ||||||||| ||||||||||  | ||||| | ||||| || |||| | ||||||||||||||||||      
T  36614431 tttcatcagaatgtcaaattctatacatttcttatctatttttctattttatg-ctaaattcaattctaaggacaatgtgttctttggtattttatgttt 36614529  T
Q  100 cctttcagaatacataaacgtatctcaataataatca 136  Q
      ||||||||||  |||||||||||||||||||||||    
T  36614530 tatttcagaatatttaaacgtatctcaataataatca 36614566  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 21277168 - 21277119
Alignment:
Q  81 tctttggtattttatgtaccctttcagaatacataaacgtatctcaataa 130  Q
    |||| ||||||||||||  |||||||||||||||||| ||||||||||||    
T  21277168 tcttaggtattttatgtttcctttcagaatacataaatgtatctcaataa 21277119  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 17465381 - 17465337
Alignment:
Q  86 ggtattttatgtaccctttcagaatacataaacgtatctcaataa 130  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||    
T  17465381 ggtattttatgtttcctttcagaatacataaatgtatctcaataa 17465337  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 12634143 - 12634179
Alignment:
Q  100 cctttcagaatacataaacgtatctcaataataatca 136  Q
    ||||||||||||||| || ||||||||||||||||||    
T  12634143 cctttcagaatacatgaatgtatctcaataataatca 12634179  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 26266884 - 26266828
Alignment:
Q  80 ttctttggtattttatgtaccctttcagaatacataaacgtatctcaataataatca 136  Q
    |||||| |||||||||||  ||||| |||||||||||| ||||||||||||||||||    
T  26266884 ttctttcgtattttatgtttcctttgagaatacataaatgtatctcaataataatca 26266828  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 45963157 - 45963055
Alignment:
Q  34 atctatttctctattttataacgaaattatttctacgggcaatattttctttggtattttatgtaccctttcagaatacataaacgtatctcaataataa 133  Q
    ||||||||||||||||||||| ||| ||||| ||| || |||  | ||||||||||||| ||||  | | ||| ||||||| || ||||||||| |||||    
T  45963157 atctatttctctattttataatgaatttattcctaaggacaaggtgttctttggtatttcatgtttcatctcaaaatacatgaatgtatctcaacaataa 45963058  T
Q  134 tca 136  Q
    |||    
T  45963057 tca 45963055  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 24184896 - 24185031
Alignment:
Q  1 tttcatcataatgctaaattctaattatttcatatctatttctctattttataacgaaattatttctacgggcaatattttctttggtattttatgtacc 100  Q
    |||||||||||| |||||||||||  ||| | | |||||||| ||||||||||| ||| | |||| || || |||  | ||||||||||||| || |  |    
T  24184896 tttcatcataatactaaattctaaacattccttgtctatttcgctattttataatgaattcatttataaggacaaggtgttctttggtatttcatatttc 24184995  T
Q  101 ctttcagaatacataaacgtatctcaataataatca 136  Q
    |  ||||||||||| ||  |||||||| ||||||||    
T  24184996 cactcagaatacatgaatatatctcaacaataatca 24185031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 16918196 - 16918160
Alignment:
Q  100 cctttcagaatacataaacgtatctcaataataatca 136  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  16918196 cctttcaaaatacataaatgtatctcaataataatca 16918160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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