View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8650_low_42 (Length: 227)

Name: NF8650_low_42
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8650_low_42
NF8650_low_42
[»] chr5 (14 HSPs)
chr5 (1-226)||(8547004-8547232)
chr5 (2-215)||(9004393-9004606)
chr5 (56-227)||(8529941-8530112)
chr5 (72-215)||(8678760-8678903)
chr5 (75-215)||(2873480-2873620)
chr5 (1-227)||(8536511-8536737)
chr5 (16-215)||(8637907-8638109)
chr5 (72-215)||(9073673-9073816)
chr5 (70-215)||(2844029-2844174)
chr5 (83-215)||(8645252-8645384)
chr5 (72-227)||(1599241-1599396)
chr5 (70-215)||(2855862-2856007)
chr5 (75-200)||(2903986-2904111)
chr5 (120-171)||(31807159-31807210)
[»] chr7 (2 HSPs)
chr7 (72-227)||(48360794-48360949)
chr7 (72-227)||(35780851-35781006)
[»] scaffold0627 (1 HSPs)
scaffold0627 (9-227)||(5625-5840)
[»] chr6 (1 HSPs)
chr6 (89-227)||(16717338-16717476)
[»] chr4 (1 HSPs)
chr4 (56-227)||(9444102-9444273)
[»] chr1 (1 HSPs)
chr1 (79-141)||(5131600-5131662)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8547004 - 8547232
Alignment:
Q  1 ttcagttgcccctgttagggctagccgaagatgcaataaagcaaaagtaatagcagatgaggcagacgatcatga---actttgcccttactttgataat 97  Q
    |||| |||||||||||||||||||  ||||||||||||||| ||||| || ||  |||||||||||| |||||||   |||||||||||| |||||||||    
T  8547004 ttcaattgcccctgttagggctagaagaagatgcaataaagaaaaaggaaaagttgatgaggcagacaatcatgatgaactttgcccttattttgataat 8547103  T
Q  98 cttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcag 197  Q
    ||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8547104 cttccatctcacctcactgcccacattctgcttaaacttcacatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcag 8547203  T
Q  198 aacaacattttgctaaatcacactttgag 226  Q
    ||||||||||||||||||  |||||||||    
T  8547204 aacaacattttgctaaattgcactttgag 8547232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 9004606 - 9004393
Alignment:
Q  2 tcagttgcccctgttagggctagccgaagatgcaataaagcaaaagtaatagcagatgaggcagacgatcatgaactttgcccttactttgataatcttc 101  Q
    ||||||||||||   ||||||| || ||  ||||||||||||||||  | ||  |||||||||||   ||||||||||||||||||||||| ||||||||    
T  9004606 tcagttgcccctccaagggctatccaaaagtgcaataaagcaaaagggaaagttgatgaggcagaaagtcatgaactttgcccttactttgctaatcttc 9004507  T
Q  102 catctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaaca 201  Q
    ||||||||||||||  ||||||||| ||||| |||||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||| |||     
T  9004506 catctcacctcactaaccacattctgcttcatcttcccattaagtctcttcttatttgtagatgtgtgtgcaagatttggaaaacaattatttcataacc 9004407  T
Q  202 acattttgctaaat 215  Q
    ||||||||||||||    
T  9004406 acattttgctaaat 9004393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 8530112 - 8529941
Alignment:
Q  56 gatgaggcagacgatcatgaactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctca 155  Q
    |||||||||||   || ||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||  | |||||| ||||||    
T  8530112 gatgaggcagagagtcgtgagctttgcccttattttgataaacttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttctca 8530013  T
Q  156 tttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaatcacactttgagc 227  Q
    ||||||||||||| |||||  |||||||||||||||||||||||  ||| ||||||||||| ||||||||||    
T  8530012 tttgtaaatgtgtgtgcaaagtttggaaaacaattatttcagaatcacaatttgctaaatcgcactttgagc 8529941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 215
Target Start/End: Complemental strand, 8678903 - 8678760
Alignment:
Q  72 atgaactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttg 171  Q
    |||||||||  ||||||||||||||||||||||| ||| ||| |||||||||| | ||||| |||||||| || ||||||||||||||||||||||| ||    
T  8678903 atgaactttatccttactttgataatcttccatcacacatcattgcccacattttgcttcatcttcccattaaatctcttctcatttgtaaatgtgtgtg 8678804  T
Q  172 caagatttggaaaacaattatttcagaacaacattttgctaaat 215  Q
    |||||||||||||||| |||||||||||| ||||||||||||||    
T  8678803 caagatttggaaaacacttatttcagaaccacattttgctaaat 8678760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 75 - 215
Target Start/End: Original strand, 2873480 - 2873620
Alignment:
Q  75 aactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttgcaa 174  Q
    ||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||||||||||||| |||||||||||||| |||| |||||| |||||    
T  2873480 aactttgcccttactttgataatcttccatctcacttaactacccacattcttcttcaacttcccattaagtctcttctcatgtgtagatgtgtgtgcaa 2873579  T
Q  175 gatttggaaaacaattatttcagaacaacattttgctaaat 215  Q
     | |||||| ||| |||||||||||| ||||||||||||||    
T  2873580 aacttggaatacacttatttcagaaccacattttgctaaat 2873620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 8536737 - 8536511
Alignment:
Q  1 ttcagttgcccctgttagggctagccgaagatgcaataaagcaaaagtaatagcagatgaggcagacgatcatgaactttgcccttactttgataatctt 100  Q
    |||| ||||||||| ||||||| ||| |||| |||||||| ||||||  | ||  |||||||||||    ||| ||||||||||||| ||||||||||||    
T  8536737 ttcaattgcccctgctagggctggccaaagacgcaataaatcaaaagggaaagttgatgaggcagaaagccatcaactttgcccttattttgataatctt 8536638  T
Q  101 ccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaac 200  Q
    || |||||| | | ||| |||||||| |||||||||||  | ||||| |||||||||||||||| ||| ||||| |||||||||||| | |||||||||     
T  8536637 ccgtctcacgttattgctcacattctgcttcaacttccatttaagtcgcttctcatttgtaaatctgtgtgcaaaatttggaaaacattgatttcagaat 8536538  T
Q  201 aacattttgctaaatcacactttgagc 227  Q
     ||||||||||||||| ||||||||||    
T  8536537 cacattttgctaaatcccactttgagc 8536511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 8638109 - 8637907
Alignment:
Q  16 tagggctagccgaagatgcaataaagcaaaagtaatagcagatgaggcagacgatcatga---actttgcccttactttgataatcttccatctcacctc 112  Q
    ||||||||||| ||||||||||||||||||||  | ||  |||||  ||||   ||||||   |||||  || |||||||||||||||||||| ||| ||    
T  8638109 tagggctagcctaagatgcaataaagcaaaagggagagttgatgaatcagaaagtcatgatggactttttccatactttgataatcttccatcccacatc 8638010  T
Q  113 actgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgcta 212  Q
    ||  |||| ||||| ||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |||||||||||    
T  8638009 accacccaaattctgcttcaactttccattaagtctcttctcatttgtaaatgtgtgtgcaagatttggaaaacaatgatttcggaaccacattttgcta 8637910  T
Q  213 aat 215  Q
    |||    
T  8637909 aat 8637907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 215
Target Start/End: Original strand, 9073673 - 9073816
Alignment:
Q  72 atgaactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttg 171  Q
    ||||||||| |||||  ||||| |||||||||||||||||||||||| | ||||| |||| ||||||| ||||| |||||||||||||||||||||| ||    
T  9073673 atgaacttttccctttttttgacaatcttccatctcacctcactgccaatattctgcttcgacttcccgtcaagcctcttctcatttgtaaatgtgtgtg 9073772  T
Q  172 caagatttggaaaacaattatttcagaacaacattttgctaaat 215  Q
    ||| |||||||||| | |||||||||||| ||||||||||||||    
T  9073773 caaaatttggaaaagacttatttcagaaccacattttgctaaat 9073816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 2844029 - 2844174
Alignment:
Q  70 tcatgaactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtt 169  Q
    |||||||||||||||||||||||||||||||||||||||  | ||| |||||||||||||  | |||||||| |||||||||||||| |||| ||||||     
T  2844029 tcatgaactttgcccttactttgataatcttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtg 2844128  T
Q  170 tgcaagatttggaaaacaattatttcagaacaacattttgctaaat 215  Q
    ||||| |||||||| ||| |||| ||||||| ||||||||||||||    
T  2844129 tgcaaaatttggaatacacttatatcagaaccacattttgctaaat 2844174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 8645384 - 8645252
Alignment:
Q  83 ccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttgcaagatttgga 182  Q
    ||||||||||||||||||||||| ||| ||| |||||||||  | ||||| |||||||| || ||||||||||||||| ||||||| |||||||||||||    
T  8645384 ccttactttgataatcttccatcacacatcattgcccacatgttgcttcatcttcccattaaatctcttctcatttgtgaatgtgtgtgcaagatttgga 8645285  T
Q  183 aaacaattatttcagaacaacattttgctaaat 215  Q
    ||||| |||||||||||| ||||||||||||||    
T  8645284 aaacacttatttcagaaccacattttgctaaat 8645252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 1599241 - 1599396
Alignment:
Q  72 atgaactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttg 171  Q
    ||||| ||| |||||  |||||||||||| |||||||| ||||||||| |||||| ||||||||||| || ||||| |||||||||||||||| ||| ||    
T  1599241 atgaagttttccctttttttgataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaagtcgcttctcatttgtaaatctgtgtg 1599340  T
Q  172 caagatttggaaaacaattatttcagaacaacattttgctaaatcacactttgagc 227  Q
    ||| |||||||||||| | |||||||||  ||||||||||||||| ||||||||||    
T  1599341 caaaatttggaaaacattgatttcagaatcacattttgctaaatcgcactttgagc 1599396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 70 - 215
Target Start/End: Original strand, 2855862 - 2856007
Alignment:
Q  70 tcatgaactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtt 169  Q
    |||||||||||||||||||||||||||| ||||||||||  | ||| |||||||||||||  | |||||||| |||||||||||||| |||| ||||||     
T  2855862 tcatgaactttgcccttactttgataattttccatctcaattaactacccacattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtg 2855961  T
Q  170 tgcaagatttggaaaacaattatttcagaacaacattttgctaaat 215  Q
    ||||| |||||||| ||| |||| ||||||| ||||||||||||||    
T  2855962 tgcaaaatttggaatacacttatatcagaaccacattttgctaaat 2856007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 75 - 200
Target Start/End: Original strand, 2903986 - 2904111
Alignment:
Q  75 aactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttgcaa 174  Q
    ||||||| |||||||||||||||||||||| |||| | ||| || | ||||||||  | |||||||| |||||||||||||| |||| |||||| |||||    
T  2903986 aactttgtccttactttgataatcttccatttcacttaactaccgaaattctcctaaagcttcccattaagtctcttctcatatgtagatgtgtgtgcaa 2904085  T
Q  175 gatttggaaaacaattatttcagaac 200  Q
     |||||||| ||| ||||||||||||    
T  2904086 aatttggaatacacttatttcagaac 2904111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 31807159 - 31807210
Alignment:
Q  120 acattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttg 171  Q
    ||||||| |||| |||||||||||||||| || |||| ||||||||||||||    
T  31807159 acattctacttcgacttcccatcaagtctgttatcatatgtaaatgtgtttg 31807210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 72 - 227
Target Start/End: Original strand, 48360794 - 48360949
Alignment:
Q  72 atgaactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttg 171  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||    
T  48360794 atgaactttgcccttattttgataatcttccatatcacctcactgcccacattctccttcaacttcccattaagtctcttcttatttgtaaatctgtgtg 48360893  T
Q  172 caagatttggaaaacaattatttcagaacaacattttgctaaatcacactttgagc 227  Q
    ||| |||||||||||| | |||||||||  ||| ||||||||||| ||||||||||    
T  48360894 caaaatttggaaaacactgatttcagaatcacaatttgctaaatcgcactttgagc 48360949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 227
Target Start/End: Complemental strand, 35781006 - 35780851
Alignment:
Q  72 atgaactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttg 171  Q
    |||| |||| |||||| ||||||||||||||||| |||||||| ||||||||| | |||||||||||||| || |||||||||||||||| |||||| ||    
T  35781006 atgacctttacccttattttgataatcttccatcccacctcaccgcccacattttgcttcaacttcccataaaatctcttctcatttgtagatgtgtgtg 35780907  T
Q  172 caagatttggaaaacaattatttcagaacaacattttgctaaatcacactttgagc 227  Q
    ||  || || |||||||| ||||||||||  || ||||||||||  ||||||||||    
T  35780906 cataatctgaaaaacaatgatttcagaaccgcaatttgctaaattgcactttgagc 35780851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 5840 - 5625
Alignment:
Q  9 cccctgttagggctagccgaagatgcaataaagcaaaagtaatagcagatgaggcagacgatcatgaactttgcccttactttgataatcttccatctca 108  Q
    ||||| |||||||||||||||||||||||||||||||||  | ||  || ||||||||   |||||||  |||   ||| ||||||| ||||||||| ||    
T  5840 cccctattagggctagccgaagatgcaataaagcaaaagggaaagttgaggaggcagaaagtcatgaatgttg---ttattttgatattcttccatccca 5744  T
Q  109 cctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacatttt 208  Q
    ||||||  | |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| |||||||||| |||||||    
T  5743 cctcaccactcacatttttcttcaacttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaaagcaatgatttcagaaccacatttt 5644  T
Q  209 gctaaatcacactttgagc 227  Q
    ||||||| |||||||||||    
T  5643 gctaaattacactttgagc 5625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 89 - 227
Target Start/End: Complemental strand, 16717476 - 16717338
Alignment:
Q  89 tttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctcatttgtaaatgtgtttgcaagatttggaaaacaa 188  Q
    ||||||| ||||||||| |||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||    
T  16717476 tttgatattcttccatcccacctcaccgcccacattttgcttcaacttcccatcaagtctcttctcatttgtaaatgtgtgtgcaaaatttggaaaagaa 16717377  T
Q  189 ttatttcagaacaacattttgctaaatcacactttgagc 227  Q
    | |||||||||   ||||||||||||| |||||||||||    
T  16717376 tgatttcagaatcgcattttgctaaattacactttgagc 16717338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 9444273 - 9444102
Alignment:
Q  56 gatgaggcagacgatcatgaactttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccatcaagtctcttctca 155  Q
    |||||||||||   || ||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||  | |||||| ||||||    
T  9444273 gatgaggcagagagtcgtgagctttgcccttattttgataatcttccgtctcacctcactgcccacattctccttcgacttccatttaagtctgttctca 9444174  T
Q  156 tttgtaaatgtgtttgcaagatttggaaaacaattatttcagaacaacattttgctaaatcacactttgagc 227  Q
    ||||||||| ||| |||||  ||||||||||||| |||||||||  ||| ||||||||||  ||||||||||    
T  9444173 tttgtaaatctgtgtgcaaagtttggaaaacaatgatttcagaatcacaatttgctaaattgcactttgagc 9444102  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 5131662 - 5131600
Alignment:
Q  79 ttgcccttactttgataatcttccatctcacctcactgcccacattctccttcaacttcccat 141  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| | ||| ||||||||||    
T  5131662 ttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccat 5131600  T

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