View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_44 (Length: 224)
Name: NF8650_low_44
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_44 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 20081390 - 20081608
Alignment:
| Q |
7 |
gaaacaattaataaaagaatacaaatgcata-gtgaaaatttgaatacgtgttttgtttatgccaattctttgttgaaaatgttgaatctgttaatattc |
105 |
Q |
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| T |
20081390 |
gaaacaattaataaaagaatacaaatgcataagtgaaaatttgaatacgtgttctgtttatgccaattctttgttgaaaatgttgaatctgttaatattc |
20081489 |
T |
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| Q |
106 |
aacatgtatctcaaaaactaaaaatcaagtggcaaatgatttggcacaagttgtttcaggatataaagtttctaagccaagttgaatgacggtggtgtcg |
205 |
Q |
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| T |
20081490 |
aacatgtgcctcaaaaattaaaaatcaagtggcaaatgatttggcacaagttatttcaggatataaagtttctaagccaagttgaatggcggtggtgtcg |
20081589 |
T |
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| Q |
206 |
tcatcgcacgtgtgatata |
224 |
Q |
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||||||||||||||||||| |
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| T |
20081590 |
tcatcgcacgtgtgatata |
20081608 |
T |
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Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 23009995 - 23009826
Alignment:
| Q |
7 |
gaaacaattaataaaagaatacaaatgcata-gtgaaaatttgaatacgtgttttgtttatgccaattctttgttgaa-aatgttgaatctgttaatatt |
104 |
Q |
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||||||| ||| ||| |||||||| |||||| |||| ||||||| | | |||||||| ||| ||| ||||||| || ||| |||||||||| |||||| |
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| T |
23009995 |
gaaacaactaacaaaggaatacaagtgcataagtgagaatttgattttttattttgtttctgctaatgctttgttaaataattttgaatctgtcaatatt |
23009896 |
T |
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| Q |
105 |
caacatgtatctcaaaaactaaaaatcaagtggcaaatgatttggcacaagttgtttcaggatataaagttt |
176 |
Q |
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| T |
23009895 |
caacatgtgccacaaat--tgagaatcaagtggcaaatgatttggcacaagtagcttcatgatataaagttt |
23009826 |
T |
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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 13015959 - 13015907
Alignment:
| Q |
128 |
aatcaagtggcaaatgatttggcacaagttgtttcaggatataaagtttctaa |
180 |
Q |
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| T |
13015959 |
aatcaagtggcaaatgatttagcacaagttgtttcaggatataaggtttctaa |
13015907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Original strand, 22712084 - 22712136
Alignment:
| Q |
128 |
aatcaagtggcaaatgatttggcacaagttgtttcaggatataaagtttctaa |
180 |
Q |
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| T |
22712084 |
aatcaactggcaaatgatttagcataagttgcttcaggatataaaatttctaa |
22712136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 180
Target Start/End: Complemental strand, 13272111 - 13272059
Alignment:
| Q |
128 |
aatcaagtggcaaatgatttggcacaagttgtttcaggatataaagtttctaa |
180 |
Q |
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| T |
13272111 |
aatcaagttgcaaatgatttagcacaagtagcttcaggatataaaatttctaa |
13272059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 180
Target Start/End: Original strand, 48611 - 48701
Alignment:
| Q |
88 |
ttgaatctgttaatattcaacatgtatctcaaaaactaaaaatcaagtggcaaatgatttggcacaagttgtttcaggatataaagtttctaa |
180 |
Q |
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|||| ||||| |||||||||||||| || || || | | |||||||||||||||||| | |||||| || |||||||||||| |||||||| |
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| T |
48611 |
ttgagtctgtcaatattcaacatgtgtc--aagaattgagaatcaagtggcaaatgatctagcacaacctgcttcaggatataaggtttctaa |
48701 |
T |
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