View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8650_low_46 (Length: 222)

Name: NF8650_low_46
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8650_low_46
NF8650_low_46
[»] chr1 (8 HSPs)
chr1 (118-170)||(14466772-14466824)
chr1 (48-93)||(14466777-14466822)
chr1 (116-170)||(14466556-14466610)
chr1 (120-166)||(15035777-15035823)
chr1 (35-88)||(14466566-14466619)
chr1 (78-150)||(14534228-14534300)
chr1 (15-86)||(15035785-15035856)
chr1 (28-80)||(14481332-14481384)
[»] scaffold0400 (2 HSPs)
scaffold0400 (29-88)||(11254-11313)
scaffold0400 (120-163)||(11251-11294)
[»] scaffold0365 (2 HSPs)
scaffold0365 (29-88)||(11897-11956)
scaffold0365 (120-163)||(11894-11937)


Alignment Details
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 14466824 - 14466772
Alignment:
Q  118 caagttgtgttagaaatccaatttctcgaggaatggagccaaaaagactatta 170  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| |||||    
T  14466824 caagttgttttagaaatccaatttctcgaggaatggagccagaaagattatta 14466772  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 14466822 - 14466777
Alignment:
Q  48 agttgttttagaaatccaatttctctaggaatggagccagagagat 93  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||    
T  14466822 agttgttttagaaatccaatttctcgaggaatggagccagaaagat 14466777  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 14466610 - 14466556
Alignment:
Q  116 accaagttgtgttagaaatccaatttctcgaggaatggagccaaaaagactatta 170  Q
    ||||| |||| |||||||||||||||||  ||||||||||||| |||||||||||    
T  14466610 accaatttgttttagaaatccaatttcttcaggaatggagccagaaagactatta 14466556  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 15035823 - 15035777
Alignment:
Q  120 agttgtgttagaaatccaatttctcgaggaatggagccaaaaagact 166  Q
    |||||| ||||| |||||||||||||||||||| |||||||||||||    
T  15035823 agttgttttagatatccaatttctcgaggaatgaagccaaaaagact 15035777  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 14466619 - 14466566
Alignment:
Q  35 atcaagttgacctagttgttttagaaatccaatttctctaggaatggagccaga 88  Q
    |||||||| ||| | ||||||||||||||||||||||  |||||||||||||||    
T  14466619 atcaagttcaccaatttgttttagaaatccaatttcttcaggaatggagccaga 14466566  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 14534228 - 14534300
Alignment:
Q  78 atggagccagagagatagttaacagacaaattaagtcgaccaagttgtgttagaaatccaatttctcgaggaa 150  Q
    |||| |||||||||||||||| ||||||||| ||||  | |||||| ||||||||| || |||||| ||||||    
T  14534228 atggtgccagagagatagttagcagacaaatcaagttcagcaagttttgttagaaaccctatttcttgaggaa 14534300  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 15035856 - 15035785
Alignment:
Q  15 gagagaaggttatcagacaaatcaagttgacctagttgttttagaaatccaatttctctaggaatggagcca 86  Q
    |||||| ||||  ||||||| |||||||  || |||||||||||| |||||||||||| ||||||| |||||    
T  15035856 gagagatggttcgcagacaagtcaagttcgccgagttgttttagatatccaatttctcgaggaatgaagcca 15035785  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 14481384 - 14481332
Alignment:
Q  28 cagacaaatcaagttgacctagttgttttagaaatccaatttctctaggaatg 80  Q
    ||||||||||||||| ||| | |||||||||||| |||||||||  |||||||    
T  14481384 cagacaaatcaagttcaccgacttgttttagaaagccaatttcttgaggaatg 14481332  T

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Target: scaffold0400 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 11313 - 11254
Alignment:
Q  29 agacaaatcaagttgacctagttgttttagaaatccaatttctctaggaatggagccaga 88  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||    
T  11313 agacaagtcaagttcaccgagttgttttagaaatccaatttctcgaggaatgaagccaga 11254  T

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Target: scaffold0400; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 11294 - 11251
Alignment:
Q  120 agttgtgttagaaatccaatttctcgaggaatggagccaaaaag 163  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||    
T  11294 agttgttttagaaatccaatttctcgaggaatgaagccagaaag 11251  T

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Target: scaffold0365 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 29 - 88
Target Start/End: Complemental strand, 11956 - 11897
Alignment:
Q  29 agacaaatcaagttgacctagttgttttagaaatccaatttctctaggaatggagccaga 88  Q
    |||||| ||||||| ||| ||||||||||||||||||||||||| ||||||| |||||||    
T  11956 agacaagtcaagttcaccgagttgttttagaaatccaatttctcgaggaatgaagccaga 11897  T

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Target: scaffold0365; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 120 - 163
Target Start/End: Complemental strand, 11937 - 11894
Alignment:
Q  120 agttgtgttagaaatccaatttctcgaggaatggagccaaaaag 163  Q
    |||||| |||||||||||||||||||||||||| ||||| ||||    
T  11937 agttgttttagaaatccaatttctcgaggaatgaagccagaaag 11894  T

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