View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_50 (Length: 202)
Name: NF8650_low_50
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 3791620 - 3791452
Alignment:
| Q |
17 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3791620 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
3791521 |
T |
|
| Q |
117 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3791520 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
3791452 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 12812057 - 12811889
Alignment:
| Q |
17 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12812057 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
12811958 |
T |
|
| Q |
117 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12811957 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
12811889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 1654334 - 1654502
Alignment:
| Q |
17 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1654334 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
1654433 |
T |
|
| Q |
117 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1654434 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
1654502 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 9129868 - 9129700
Alignment:
| Q |
17 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9129868 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
9129769 |
T |
|
| Q |
117 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9129768 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
9129700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 37151990 - 37152158
Alignment:
| Q |
17 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37151990 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
37152089 |
T |
|
| Q |
117 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37152090 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
37152158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 45222308 - 45222476
Alignment:
| Q |
17 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45222308 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
45222407 |
T |
|
| Q |
117 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45222408 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
45222476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 6124771 - 6124876
Alignment:
| Q |
19 |
tctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagcag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| | || |||||| |||| || ||| || |||| || | ||||||||| ||||||| |||| | |
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|
| T |
6124771 |
tctcccgatttaaatgtattggatttgggctttttttctgctattcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctg |
6124870 |
T |
|
| Q |
119 |
tgcaaa |
124 |
Q |
| |
|
|||||| |
|
|
| T |
6124871 |
tgcaaa |
6124876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 23780262 - 23780430
Alignment:
| Q |
17 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23780262 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
23780361 |
T |
|
| Q |
117 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23780362 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
23780430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 52636681 - 52636513
Alignment:
| Q |
17 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52636681 |
attctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagc |
52636582 |
T |
|
| Q |
117 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52636581 |
agtgcaaacttcgtttgatgaattttctagtgtggattcaaacaaaatatttcttacacttcagtcgtg |
52636513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Original strand, 7304593 - 7304698
Alignment:
| Q |
19 |
tctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagcag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| | || |||||| |||| || ||| || |||| || | ||||||||| ||||||| |||| | |
|
|
| T |
7304593 |
tctcccgatttaaatgtattggatttgggctttttttctgctattcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctg |
7304692 |
T |
|
| Q |
119 |
tgcaaa |
124 |
Q |
| |
|
|||||| |
|
|
| T |
7304693 |
tgcaaa |
7304698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 124
Target Start/End: Complemental strand, 16443592 - 16443487
Alignment:
| Q |
19 |
tctcctgatttaaatgtattggatttgggattttttgcagccattcaagcattacaacaaaagaaagtgacaaggacggttgatgaacttattcaagcag |
118 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||| | || |||||| |||| || ||| || |||| || | ||||||||| ||||||| |||| | |
|
|
| T |
16443592 |
tctcccgatttaaatgtattggatttgggctttttttctgctattcaatcattgcagcaacaggaagtaactaattcggttgatgcacttattgaagctg |
16443493 |
T |
|
| Q |
119 |
tgcaaa |
124 |
Q |
| |
|
|||||| |
|
|
| T |
16443492 |
tgcaaa |
16443487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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