View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8650_low_6 (Length: 501)
Name: NF8650_low_6
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8650_low_6 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 29934247 - 29934730
Alignment:
| Q |
1 |
ttatcacaattataatgaaaatatggcagacttacagaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtaacaacatcct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29934247 |
ttatcacaattataatgaaaatatggcagacttacagaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgacaacatcct |
29934346 |
T |
|
| Q |
101 |
taagagttgcatcgtttggaagtctccaataatcaatagcaatagcaggagcaggtacattttcaactttaccactttcaattgcattcagatattgtgt |
200 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29934347 |
taagagttgcatcatttggaagtctccaataatcaatagcaatagcaggagcaggtacattttcaactttaccactttcaattgcattcagatattgtgt |
29934446 |
T |
|
| Q |
201 |
gtatgaaatcacagcttcctcctctaaataaccaacaaacctatgtgctatttttggtgagaggatgtaaaacacaaagaatccattgaagaaaacacct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29934447 |
gtatgaaatcacagcttcctcctctaaataaccaacaaacctatgtgctatttttggtgagaggatgtaaaacacaaagaatccattaaagaaaacacct |
29934546 |
T |
|
| Q |
301 |
tgtgcagtaataaccaaaagcctctcatgccaacttggtttcacaagctcaaccattgtcatcaaatgcatcctttcattctctgcttcttcaagtaatg |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29934547 |
tgtgcagtaataaccaaaagcctctcatgccaacttggtttcacaagctcaaccattgtcatcaaatgcatcctttcattctctgcttcttcaagtaatg |
29934646 |
T |
|
| Q |
401 |
ctttgatccaaccaccagcatgttgaaattttcttaaagattttaagtgtaaaagcatccctcccaccattccagggaccgctg |
484 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29934647 |
ctttgatccaaccaccggcatgttgaaattttcttagagattttaagtgtaaaagcatccctcccaccattccagggaccgctg |
29934730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 37 - 471
Target Start/End: Original strand, 29931559 - 29931993
Alignment:
| Q |
37 |
gaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtaacaacatccttaagagttgcatcgtttggaagtctccaataatcaa |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
29931559 |
gaagcaaagtgattgacatccctatgatgagcctcatcagcacgaataacagtgataacatccttaagagttgcatccttaggaagtctccaataatcaa |
29931658 |
T |
|
| Q |
137 |
tagcaatagcaggagcaggtacattttcaactttaccactttcaattgcattcagatattgtgtgtatgaaatcacagcttcctcctctaaataaccaac |
236 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29931659 |
ttgcaatagcaggagcaggtacattttcaactttaccactctcaattgcattcaaatgttgtgtatatgaaatcacagcttcctcctctaaataaccaac |
29931758 |
T |
|
| Q |
237 |
aaacctatgtgctatttttggtgagaggatgtaaaacacaaagaatccattgaagaaaacaccttgtgcagtaataaccaaaagcctctcatgccaactt |
336 |
Q |
| |
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|||||| ||||| ||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
29931759 |
aaacctgtgtgcagtttttggtgagagtatgtaaaaaacaaagaatgcattgaagaaaactccttgtgcagtaataaccaaaagcctttcatgccaactt |
29931858 |
T |
|
| Q |
337 |
ggtttcacaagctcaaccattgtcatcaaatgcatcctttcattctctgcttcttcaagtaatgctttgatccaaccaccagcatgttgaaattttctta |
436 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29931859 |
ggttttacaagctctaccattgtcatcaaatgcatcctctcattctctgcttcttcaagtaatgctttgatccaaccaccagtgtgttgaaattttctta |
29931958 |
T |
|
| Q |
437 |
aagattttaagtgtaaaagcatccctcccaccatt |
471 |
Q |
| |
|
||| || ||||||||||||||||||||||||||| |
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|
| T |
29931959 |
gagacttcaagtgtaaaagcatccctcccaccatt |
29931993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 484
Target Start/End: Complemental strand, 37469832 - 37469400
Alignment:
| Q |
52 |
acatccctatgatgagcctcatcagcacgaataacagtaacaacatccttaagagttgcatcgtttggaagtctccaataatcaatagcaatagcaggag |
151 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||| || || | |||||| || | | ||||| || ||||| |||||||| || || ||||| ||||||| |
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|
| T |
37469832 |
acatcccgatggtgagcctcgtcagcacgaatgactgttataacatctttcaatttggcatccttgggaagcctccaatagtctattgcaatggcaggag |
37469733 |
T |
|
| Q |
152 |
caggtacattttcaactttaccactttcaattgcattcagatattgtgtgtatgaaatcacagcttcctcctctaaataaccaacaaacctatgtgctat |
251 |
Q |
| |
|
|||| |||||||||| | |||||| ||||| | |||| ||| | ||||| ||| | |||||| || || | || ||||||| ||||| || | |
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|
| T |
37469732 |
caggaacattttcaattgcaccactatcaatgtccttcaaatactcagtgtaagaatgtatagcttcttcttcaaggtacccaacaactctatgagccac |
37469633 |
T |
|
| Q |
252 |
ttttggtgagaggatgtaaaacacaaagaatccattgaagaaaacaccttgtgcagtaataaccaaaagcctctcatgccaacttggtttcacaagctca |
351 |
Q |
| |
|
||||| || || ||||||| ||||||||| ||||||||||||| || ||| ||| || ||||| || ||||| | ||| | || |||||||| || |
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|
| T |
37469632 |
ctttggggaaagtatgtaaagtacaaagaatgcattgaagaaaactccctgtacagcaagaaccagaaatctctcgtaccatttcggcttcacaagttct |
37469533 |
T |
|
| Q |
352 |
accattgtcatcaaatgcatcctttcattctctgcttcttcaagtaatgctttgatccaaccaccagcatgttgaaattttcttaaagattttaagtgta |
451 |
Q |
| |
|
||||| ||||| | |||||||| |||||||||||||||||||| |||||||||| |||||||||| ||| |||||||||| | || || | ||| | |
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| T |
37469532 |
accatagtcattaggtgcatcctctcattctctgcttcttcaagcaatgctttgacccaaccaccactatgctgaaattttcggagtgacttgaggtgca |
37469433 |
T |
|
| Q |
452 |
aaagcatccctcccaccattccagggaccgctg |
484 |
Q |
| |
|
| ||||||||||| |||||||||||||| |||| |
|
|
| T |
37469432 |
acagcatccctccaaccattccagggacagctg |
37469400 |
T |
|
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