View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8650_low_8 (Length: 490)

Name: NF8650_low_8
Description: NF8650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8650_low_8
NF8650_low_8
[»] chr1 (6 HSPs)
chr1 (1-425)||(20792685-20793109)
chr1 (300-476)||(20793038-20793211)
chr1 (327-433)||(20792984-20793090)
chr1 (360-436)||(20792990-20793066)
chr1 (408-449)||(20792984-20793025)
chr1 (389-449)||(20792992-20793052)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 20792685 - 20793109
Alignment:
Q  1 gatacatgagaagatgaacagttctcaaactgaagctctgattgtaagaagacaaagccctctgcaattctttatcatcgatcaaaccacttccatcttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20792685 gatacatgagaagatgaacagttctcaaactgaagctctgattgtaagaagacaaagccctctgcaattctttatcatcgatcaaaccacttccatcttg 20792784  T
Q  101 atccgccacttgaaagcatgcaacgatgcttggatcggtaccgggagggaatgttgacggaaccagtgaagcgaacgggcttgcatacgccggcggtggg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  20792785 atccgccacttgaaagcatgcaacgatgcttggatcggtaccgggagggaatgttgacggaaccagtgaagcgaacgggcttgcgtacgccggtggtggg 20792884  T
Q  201 taggcagagccaccgccgccggaggagtgagaatcttcctttggtggtttctggtaaggggcggcgtaaggagcggagggttggccgtaggaggtggggg 300  Q
    |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20792885 taggtagcgccaccgccgccggaggagtgagaatcttcctttggtggtttctggtaaggggcggcgtaaggagcggagggttggccgtaggaggtggggg 20792984  T
Q  301 gaggagcaccgtaggactgagatggcggtggtgcgccgtaggattgagatggaggaggagcgccgtaggattgggatggtggatgtgagccgtgggattg 400  Q
    | || || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20792985 gtggtgcgccgtaggattgagatggcggtggtgcgccgtaggattgagatggaggaggagcgccgtaggattgggatggtggatgtgagccgtgggattg 20793084  T
Q  401 ggaaggaggtggtgcgccgtaggat 425  Q
     || ||||| || || |||||||||    
T  20793085 agatggaggaggggcaccgtaggat 20793109  T

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Target: chr1; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 300 - 476
Target Start/End: Original strand, 20793038 - 20793211
Alignment:
Q  300 ggaggagcaccgtaggactgagatggcggtggtgcgccgtaggattgagatggaggaggagcgccgtaggattgggatggtggatgtgagccgtgggatt 399  Q
    |||||||| |||||||| || ||||| ||  ||| ||||| |||||||||||||||||| || |||||||||   |||||||||||||||||||| ||||    
T  20793038 ggaggagcgccgtaggattgggatggtggatgtgagccgtgggattgagatggaggaggggcaccgtaggat---gatggtggatgtgagccgtgagatt 20793134  T
Q  400 gggaaggaggtggtgcgccgtaggattgggatggtggtggtgcgccgtagccgtaaccgtaactgggaggttgattt 476  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  20793135 gggaaggaggtggtgcgccgtaggattgggaaggaggtggtgcgccgtagccgtaaccgtaactgggaggttgattt 20793211  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 327 - 433
Target Start/End: Original strand, 20792984 - 20793090
Alignment:
Q  327 ggtggtgcgccgtaggattgagatggaggaggagcgccgtaggattgggatggtggatgtgagccgtgggattgggaaggaggtggtgcgccgtaggatt 426  Q
    |||||||||||||||||||||||||| || || |||||||||||||| ||||| ||| | | ||||| ||||||||| || ||  ||| ||||| |||||    
T  20792984 ggtggtgcgccgtaggattgagatggcggtggtgcgccgtaggattgagatggaggaggagcgccgtaggattgggatggtggatgtgagccgtgggatt 20793083  T
Q  427 gggatgg 433  Q
    | |||||    
T  20793084 gagatgg 20793090  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 360 - 436
Target Start/End: Original strand, 20792990 - 20793066
Alignment:
Q  360 gcgccgtaggattgggatggtggatgtgagccgtgggattgggaaggaggtggtgcgccgtaggattgggatggtgg 436  Q
    |||||||||||||| ||||| ||  ||| ||||| |||||| || ||||| || |||||||||||||||||||||||    
T  20792990 gcgccgtaggattgagatggcggtggtgcgccgtaggattgagatggaggaggagcgccgtaggattgggatggtgg 20793066  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 408 - 449
Target Start/End: Original strand, 20792984 - 20793025
Alignment:
Q  408 ggtggtgcgccgtaggattgggatggtggtggtgcgccgtag 449  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  20792984 ggtggtgcgccgtaggattgagatggcggtggtgcgccgtag 20793025  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 449
Target Start/End: Original strand, 20792992 - 20793052
Alignment:
Q  389 gccgtgggattgggaaggaggtggtgcgccgtaggattgggatggtggtggtgcgccgtag 449  Q
    ||||| |||||| || || |||||||||||||||||||| ||||| || || |||||||||    
T  20792992 gccgtaggattgagatggcggtggtgcgccgtaggattgagatggaggaggagcgccgtag 20793052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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