View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8651_high_10 (Length: 276)

Name: NF8651_high_10
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8651_high_10
NF8651_high_10
[»] chr5 (3 HSPs)
chr5 (48-220)||(11336209-11336381)
chr5 (48-153)||(43379448-43379553)
chr5 (48-153)||(43378572-43378677)
[»] chr6 (4 HSPs)
chr6 (48-87)||(13208225-13208264)
chr6 (50-108)||(3163534-3163592)
chr6 (165-207)||(10740746-10740788)
chr6 (48-153)||(13207346-13207451)
[»] chr2 (3 HSPs)
chr2 (54-101)||(3466658-3466705)
chr2 (155-220)||(8985740-8985805)
chr2 (48-101)||(39062863-39062916)
[»] chr8 (1 HSPs)
chr8 (73-139)||(3582072-3582138)
[»] chr7 (3 HSPs)
chr7 (48-101)||(35752377-35752430)
chr7 (155-220)||(46964298-46964363)
chr7 (53-101)||(46294693-46294741)
[»] chr4 (1 HSPs)
chr4 (155-220)||(16869676-16869741)
[»] chr3 (1 HSPs)
chr3 (85-153)||(40613800-40613868)


Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 48 - 220
Target Start/End: Complemental strand, 11336381 - 11336209
Alignment:
Q  48 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| |||||||||||||||| ||||||||||||||    
T  11336381 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcacacacctaaaagctggaccggggaaaatggaggcttcctaaatggaagaaagat 11336282  T
Q  148 gaactcgtatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 220  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11336281 gaactcgtgtatttgtgttgtttacatggtatcaagagcatggtttgattcttcttaaattactcgtcgcttc 11336209  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 153
Target Start/End: Original strand, 43379448 - 43379553
Alignment:
Q  48 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 147  Q
    ||||||||||||||| ||||||||||||||| |||| ||||||||| |||||||| | |||||  |||| |||||||| |||| | ||||||  ||||||    
T  43379448 caaaccttttaatcccaacccttgcttttatttttgccacatgtcacacatctaagagctggaatgggataaatggagccttcataaatggagcaaagat 43379547  T
Q  148 gaactc 153  Q
    ||||||    
T  43379548 gaactc 43379553  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 43378677 - 43378572
Alignment:
Q  48 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 147  Q
    ||||||||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | || ||  |||  |||||||| |||| | ||||||  ||||||    
T  43378677 caaaccttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctagaatggggtaaatggagccttcataaatggagcaaagat 43378578  T
Q  148 gaactc 153  Q
    ||||||    
T  43378577 gaactc 43378572  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 13208225 - 13208264
Alignment:
Q  48 caaaccttttaatcctaacccttgcttttatgtttgtcac 87  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  13208225 caaaccttttaatcccaacccttgcttttatttttgtcac 13208264  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 3163592 - 3163534
Alignment:
Q  50 aaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactg 108  Q
    |||||||| ||||||||||||| |||||| |||| ||||||||  ||||||| ||||||    
T  3163592 aaccttttgatcctaacccttggttttatttttgacacatgtcgcacatctataaactg 3163534  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 10740746 - 10740788
Alignment:
Q  165 ttgtttacatggtatcaagagcatggtttgattcttcttgaat 207  Q
    ||||| |||||||||||||||||||||||||| || |||||||    
T  10740746 ttgttaacatggtatcaagagcatggtttgatcctccttgaat 10740788  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 13207451 - 13207346
Alignment:
Q  48 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagat 147  Q
    |||| |||||||||  ||||||||||||||| |||| ||| ||||| |||||||| | |||||  |||  ||||| || |||| | ||||||  ||||||    
T  13207451 caaatcttttaatctcaacccttgcttttatttttgccacgtgtcacacatctaagagctggaatggggtaaatgtagccttcgtaaatggagtaaagat 13207352  T
Q  148 gaactc 153  Q
    ||||||    
T  13207351 gaactc 13207346  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 101
Target Start/End: Complemental strand, 3466705 - 3466658
Alignment:
Q  54 ttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 101  Q
    |||||||||||||||||| |||||| ||||||| |||||| |||||||    
T  3466705 ttttaatcctaacccttgattttatttttgtcatatgtcacacatcta 3466658  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 8985740 - 8985805
Alignment:
Q  155 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 220  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  8985740 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 8985805  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 39062863 - 39062916
Alignment:
Q  48 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 101  Q
    ||||||||||||||||| || ||| ||||||  ||| |||||||||||||||||    
T  39062863 caaaccttttaatcctagccattgattttattgttgccacatgtcatacatcta 39062916  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 3582072 - 3582138
Alignment:
Q  73 ttttatgtttgtcacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatgga 139  Q
    |||||| ||| |||||||||||||||||||||| | |||  ||| |||| |||||||||| ||||||    
T  3582072 ttttatttttctcacatgtcatacatctaaaaaatagacatggataaatagaggcttcctaaatgga 3582138  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 35752430 - 35752377
Alignment:
Q  48 caaaccttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 101  Q
    ||||||||||||||  |||| ||| |||||| |||| |||||||||||||||||    
T  35752430 caaaccttttaatcacaaccattgattttatttttgccacatgtcatacatcta 35752377  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Complemental strand, 46964363 - 46964298
Alignment:
Q  155 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 220  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  46964363 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 46964298  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 46294741 - 46294693
Alignment:
Q  53 cttttaatcctaacccttgcttttatgtttgtcacatgtcatacatcta 101  Q
    ||||||||||||||||||| ||||||  |||||| |||||| |||||||    
T  46294741 cttttaatcctaacccttgattttattattgtcatatgtcacacatcta 46294693  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 220
Target Start/End: Original strand, 16869676 - 16869741
Alignment:
Q  155 tatatttgtgttgtttacatggtatcaagagcatggtttgattcttcttgaattactcgtcgcttc 220  Q
    ||||| ||| ||||| |||||||||||||||| ||||||||  || ||||| ||| ||||||||||    
T  16869676 tatatctgtattgttaacatggtatcaagagcgtggtttgaccctccttgatttagtcgtcgcttc 16869741  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 153
Target Start/End: Original strand, 40613800 - 40613868
Alignment:
Q  85 cacatgtcatacatctaaaaactggaccgggaaaaatggaggcttcctgaatggaagaaagatgaactc 153  Q
    ||||||||| ||||||| ||| || || |||| |||||||||||| || ||||||  ||||||||||||    
T  40613800 cacatgtcagacatctacaaaatgaacagggataaatggaggcttgctaaatggagcaaagatgaactc 40613868  T

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