View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_high_2 (Length: 443)
Name: NF8651_high_2
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 217
Target Start/End: Complemental strand, 24696455 - 24696247
Alignment:
| Q |
9 |
agcagagaaaatgagagaaaataactaacattattcagataaagccctaataggttggagtcatgtcggtagtaaatgaagcaataacaaagtacacata |
108 |
Q |
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| T |
24696455 |
agcaaagaaaatgagagaaaataactaacattattcagataaagccctaataggttggagtcatgtcggtagtaaatgaagcaataacaaagtacacata |
24696356 |
T |
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| Q |
109 |
tcataaaaggaaagatagagaaagagaaggaatgtgaaggaagtagaaagcttacaagtgtaatggaagtacaagccaaatctcttcattcaagtactat |
208 |
Q |
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| T |
24696355 |
tcataaaaggaaagatagagaaagagaaggaatgtgaaggaagtagaaagcttacaagtgtaatggaagtacaagccaaatctcttcattcaagtactat |
24696256 |
T |
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| Q |
209 |
gttcttctc |
217 |
Q |
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||||||||| |
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| T |
24696255 |
gttcttctc |
24696247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 256 - 408
Target Start/End: Complemental strand, 24696208 - 24696060
Alignment:
| Q |
256 |
gtataatctctctcactcttcattccataactaattcaacatttgtcactctttcttacaataatctattataatattatgcannnnnnnngtgtgttag |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| |
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| T |
24696208 |
gtataatctctctcactcttcattccataactaattcaacatttgtcactctttcttacaataatctattataatactatgcattttt----tttgttag |
24696113 |
T |
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| Q |
356 |
aggtgtggacatttagtgtttaaaataaattacctctagtagagaaaatctat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24696112 |
aggtgtggacatttagtgtttaaaataaattacctctagtagagaaaatctat |
24696060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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