View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8651_high_3 (Length: 434)
Name: NF8651_high_3
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 5 - 420
Target Start/End: Original strand, 2107441 - 2107856
Alignment:
| Q |
5 |
ctgcactgacttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaatttccatttagataattc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2107441 |
ctgcactgacttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaatttccatttagataattc |
2107540 |
T |
|
| Q |
105 |
ttttgaacaatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagattgcatgaattaacgatc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2107541 |
ttttgaacaatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagattgcatgaattaacgatc |
2107640 |
T |
|
| Q |
205 |
atccgacggcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaagtacttcagtttagcaaattggtggtttcacatgtgaact |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2107641 |
atccgacggcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaagtacttcagtttagcaaattggtggtttcacatgtgaact |
2107740 |
T |
|
| Q |
305 |
ggcatgtcaaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtagatgcccactattagcagtttagggacttaaaaaatgttg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2107741 |
ggcatgtcaaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtagatgcccactattagcagtttagggacttaaaaaatgttg |
2107840 |
T |
|
| Q |
405 |
tcatgcatgttgtttg |
420 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2107841 |
tcatgcatgttgtttg |
2107856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 5 - 397
Target Start/End: Original strand, 2099262 - 2099673
Alignment:
| Q |
5 |
ctgcactgacttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaat-ttccatttagataatt |
103 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||| | |||||||||| ||||| ||||||||| ||| |||| ||| || ||||||||||||| |
|
|
| T |
2099262 |
ctgcactgacttgcatccaaagttgctttaaaaccaaaaatcatctttgctttgtgtttagttttctgcatcagtagaaaaaaatttcatttagataatt |
2099361 |
T |
|
| Q |
104 |
cttt-------------tgaacaatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagattgc |
190 |
Q |
| |
|
||| |||||||||||||||||||||||| || |||||||||| ||||||||| ||| |||||| |||||||||||||||||| || |
|
|
| T |
2099362 |
ttttgggagaaatattttgaacaatctattaacttgtcttaaatctgtatttaattgatcttaaac--tttatgtagatggtcaagttcaagaagatcgc |
2099459 |
T |
|
| Q |
191 |
atgaattaacgatcatccgacggcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaa-------gtacttcagtttagcaaat |
283 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
2099460 |
atgaattaacgatcatctgacagcatgccactgtcaaaaactattggcaactatgttacatttctgtctagcaactagtaagtactacagtttagcaaat |
2099559 |
T |
|
| Q |
284 |
tggtggtttcacatgtgaactggcatgtcaaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtagatgcccactattagcagt |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
2099560 |
tggtggtttcacatgtgaactggcatgtcaaaggtcaaatgttgtttgtaatattgtaaatttgaacatgcccaatgtgtagatgcccaccattagcagt |
2099659 |
T |
|
| Q |
384 |
ttagggacttaaaa |
397 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2099660 |
ttagggacttaaaa |
2099673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 133 - 356
Target Start/End: Original strand, 2089119 - 2089338
Alignment:
| Q |
133 |
atatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagattgcatgaattaacgatcatccgacggcatgccactgtcaaaaact |
232 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||| ||||||||| |||||||| ||||||||||| | |||| ||| |||||||||||||||||||| |
|
|
| T |
2089119 |
atatgtagttaatggatcttaaac--tttttgtagatggtcaagttgaagaagatcgcatgaattaatgttcatatgacagcatgccactgtcaaaaact |
2089216 |
T |
|
| Q |
233 |
attggcaactatgttacatttatgtctagcaagtacttcagtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatattgtttgt |
332 |
Q |
| |
|
|||||||||||||||| ||| |||||| |||||| || ||||||| ||| ||||||| | |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
2089217 |
attggcaactatgttatctttctgtctaacaagta--acaatttagcacattagtggttttatatgtgaccatgcatgtcaaaggtcaaatattgtttgt |
2089314 |
T |
|
| Q |
333 |
aatattgtaaatttgaacatgcct |
356 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2089315 |
aatattgtaaatttgaacatgcct |
2089338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 2055168 - 2055237
Alignment:
| Q |
30 |
ctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaatttccatttagat |
99 |
Q |
| |
|
|||| ||||| |||||| |||||||||| ||||||||||||| |||||| |||| |||| ||||||||| |
|
|
| T |
2055168 |
ctttgaaaccgaaaagcatctttgctttgtgtttggttttctatttcaattgatatattttcatttagat |
2055237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University