View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_high_4 (Length: 354)
Name: NF8651_high_4
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_high_4 |
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| [»] scaffold0855 (1 HSPs) |
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| [»] scaffold0847 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 23057217 - 23057149
Alignment:
| Q |
19 |
agtgaggagtaaagaaaagttcatttgattcattgagataacgtttgtttggatcgtgaatgatgaataa |
88 |
Q |
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| T |
23057217 |
agtgaggagtaaagaaaagttcatt-gattcattgagataacgtttgtttggatcgtgaatgatgaataa |
23057149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 23061518 - 23061450
Alignment:
| Q |
19 |
agtgaggagtaaagaaaagttcatttgattcattgagataacgtttgtttggatcgtgaatgatgaataa |
88 |
Q |
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| T |
23061518 |
agtgaggagtaaagaaaagttcatt-gattcattgagataacgtttgtttggatcgtgaatgatgaataa |
23061450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 23056548 - 23056479
Alignment:
| Q |
285 |
ttctctccgctgccacactgcctcctcttgctgttctccaaagccctatctgtctgtatccttgattctc |
354 |
Q |
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| T |
23056548 |
ttctctccgccgccgcactgcctcctcttgttgttctccaaagccctatctgtatgtatccttgattctc |
23056479 |
T |
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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 1594910 - 1594855
Alignment:
| Q |
191 |
tacttaacctattcaaatagaaattatctagacatagaaagaagaataaataacat |
246 |
Q |
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| T |
1594910 |
tacttaacctaatcaaagagaaattagctagacagtgaaagaagaataaataacat |
1594855 |
T |
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Target: scaffold0855 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0855
Description:
Target: scaffold0855; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 1203 - 1329
Alignment:
| Q |
140 |
aaaggtactcagcaaattacaaggttcaagcaatttacataaaatatcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataa |
239 |
Q |
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||||||||||| ||||||| | |||||||| | |||| | || ||||| || |||||||| ||||| ||||||| || |||||| | |||| ||||| |
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| T |
1203 |
aaaggtactcaacaaattatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctggacataaagagaaaaataa |
1302 |
T |
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| Q |
240 |
ataacatggagataaaaataaccatga |
266 |
Q |
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| T |
1303 |
ataacatggaaattaaaataaccatga |
1329 |
T |
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Target: scaffold0847 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0847
Description:
Target: scaffold0847; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 1368 - 1494
Alignment:
| Q |
140 |
aaaggtactcagcaaattacaaggttcaagcaatttacataaaatatcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataa |
239 |
Q |
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||||||||||| ||||||| | |||||||| | |||| | || ||||| || |||||||| ||||| ||||||| || |||||| | |||| ||||| |
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| T |
1368 |
aaaggtactcaacaaattatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctggacataaagagaaaaataa |
1467 |
T |
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| Q |
240 |
ataacatggagataaaaataaccatga |
266 |
Q |
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| T |
1468 |
ataacatggaaattaaaataaccatga |
1494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 9618952 - 9619029
Alignment:
| Q |
185 |
atcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataaataacatggagataaaaataacca |
263 |
Q |
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| T |
9618952 |
atcctctacgtaacctaatcaaatagaaattaactagaaatagagagaa-aataaataacatggaaagtaaaataacca |
9619029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 4962386 - 4962476
Alignment:
| Q |
174 |
ttacataaaatatcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataaataacatggagataaaaataaccat |
264 |
Q |
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||||||| || ||| ||||||||||||| |||| |||| ||| ||||||| || |||||||||||||||||| | | ||||||||||| |
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| T |
4962386 |
ttacatagaagatcatctacttaacctaatcaaggagaatttagttagacatggagagaagaataaataacatgaaaagtaaaataaccat |
4962476 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 20690578 - 20690650
Alignment:
| Q |
192 |
acttaacctattcaaatagaaattatctagacatagaaagaagaataaataacatggagataaaaataaccat |
264 |
Q |
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|||||||||||||||| | |||||| |||||| |||| |||||||||| ||| || | || ||||||||||| |
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| T |
20690578 |
acttaacctattcaaagataaattagctagacctagagagaagaataagtaatataggaattaaaataaccat |
20690650 |
T |
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