View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_high_7 (Length: 308)
Name: NF8651_high_7
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 61 - 296
Target Start/End: Original strand, 44395334 - 44395569
Alignment:
| Q |
61 |
tgttttcctacaaaatgactgaaatgtggacaacaatgggatcaaccttagcaagtttcatgttcatttgggctatcataagacaatattgtccatacca |
160 |
Q |
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| T |
44395334 |
tgttttcctacaaaatgactgaaatgtggacaacaatgggatcaaccttagcaagtttcatgttcatttgggctatcataagacaatattgtccatacca |
44395433 |
T |
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| Q |
161 |
acttctacgtttctttgaaaaatacagtcacagaatcatggactacttctatccttacataagaatttcattccatgaattcttaggtgacagactcaaa |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44395434 |
acttctacgtttctttgaaaaatacagtcacagaatcatggactacttctatccttacataagaatttcattccatgaattcttaggtgacagactcaaa |
44395533 |
T |
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| Q |
261 |
agaagtgatgcttatggagctgttgaagcttatctc |
296 |
Q |
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| T |
44395534 |
agaagtgatgcttatggagctgttgaagcttatctc |
44395569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 1800261 - 1800298
Alignment:
| Q |
231 |
ttccatgaattcttaggtgacagactcaaaagaagtga |
268 |
Q |
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| T |
1800261 |
ttccatgaattctcaggtgaaagactcaaaagaagtga |
1800298 |
T |
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