View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_low_1 (Length: 976)
Name: NF8651_low_1
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 17 - 553
Target Start/End: Complemental strand, 21514568 - 21514030
Alignment:
| Q |
17 |
caagtctctcgtattttatctttgatctcttttctttatctccattctgctttagtccatcgatcatgaagggaccttgacttgacttgaataaattaac |
116 |
Q |
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| T |
21514568 |
caagtctctcgtattttatctttcatctcttttctttttctcccttctgctttagtccatcgatcatgaagggaccttgacttgacttgaataaattgac |
21514469 |
T |
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| Q |
117 |
gacactgattcactcttgttgaacaaggaacattttacttgtcgctttctcacttgtacttctttgttgtcgtgtcaaactcacaaacagagagacatat |
216 |
Q |
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| T |
21514468 |
gacactgattcactcttgttgaacaaggaacattttacttgtcgctttctcacttgtacttctttgttgtcgtgtcaaactcacaaacagagagacatat |
21514369 |
T |
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| Q |
217 |
agaaaagtgaagacgctacaactttgttgttctgttccattcaatttcaccgacaaca---caatggagacagtgggttctacgaggttgggtagagcat |
313 |
Q |
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| T |
21514368 |
agaaa-gtgaagacgctacaattttgttgttctgttccattcaatttcaccgacaacaacacaatggagacagtgggttctacgaggttgggtagagcat |
21514270 |
T |
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| Q |
314 |
cttcacgctacggtgcacctgcagtgttcaatggtcctgttcgtaaatgggagaagaaatgggttcatgtttcaccttcttcgtttaacaacaacaagaa |
413 |
Q |
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| T |
21514269 |
cttcacgctacggtgcacctgcagtgttcaatggtcctgttcgtaaatgggagaagaaatgggttcatgtttcaccttcttcgtttaacaacaacaagaa |
21514170 |
T |
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| Q |
414 |
aaacaacaaggataatagtaacgagaaatctcgtttacttctccgtcgttggactccggttgctaactcttcttctgctgaggatgtttctgatgagcca |
513 |
Q |
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| T |
21514169 |
aaataataaggataatagtaacgagaaatctcgtttacttcttcgtcgttggactccggttgcgaattcttcttctgctgaggatgtttctgatgagcca |
21514070 |
T |
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| Q |
514 |
cctagaaggaagtttcgttatactcctgtatgtcattgcc |
553 |
Q |
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| T |
21514069 |
cctagaaggaagtttcgttatactcctgtatgttattgcc |
21514030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 582 - 962
Target Start/End: Complemental strand, 21514019 - 21513635
Alignment:
| Q |
582 |
gttctgtgaaaaatgaagtgaatatttagggtttagggttttattttggggttaaaaagttttgannnnnnncttctgatatgtttgttggcgtcaaatt |
681 |
Q |
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| T |
21514019 |
gttctgtgaaaaatgaagtgaatatttagggtttagggttttattttggggttaaaaagttt-gatttttt-cttctgatgtgtttgttggcgtcaattt |
21513922 |
T |
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| Q |
682 |
ttttgttgggtttgtggaattcaagagaaacagtgattttttatgtgaacaagagtttttgggttgttgggttggattggattgtattgcaatgtatgca |
781 |
Q |
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| T |
21513921 |
ttttgttgggtttgtggaattcaagagaaacaatgattttt-atgtgaacaagagtttttgggttgttgggttggattggattgtattgcaatgtatgca |
21513823 |
T |
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| Q |
782 |
tgtaggttgaattgggatttgtggtactgacacgtagtc-------------tacttcttggattaggcgtgtctacgtgttgtatatgtatattgtccg |
868 |
Q |
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| T |
21513822 |
tgtaggttgaattgggatttgtgg------cacgtagtctaaaaagcacagatacttcttggattaggcgtgtctatgtgttgtatatgtatagtgtccg |
21513729 |
T |
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| Q |
869 |
tcacgacaccaatacacatgattacattaaattttatgtcattttctcaaattagacatgtcctggtgtccgtgtctatgtatgtgtctgtgct |
962 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21513728 |
tcacgacaccaatacacatgattacattaaattttatgtcattttctcaaattagacatgtcctggtgtctgtgtctatgtatgtgtctgtgct |
21513635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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