View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_low_10 (Length: 406)
Name: NF8651_low_10
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 230 - 398
Target Start/End: Original strand, 7441706 - 7441878
Alignment:
| Q |
230 |
cctagtcgaaattgctcttttcttgtttataagcaaattgtatcaaggaggagtaaactggggtgcttcaaaagctattaaaaaagttccaagtcaatga |
329 |
Q |
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| T |
7441706 |
cctagtcgaaattgctcttttcttgtttataagcaaattgtatcaatgaggagtaaactggggtgcttcaaaagctattaaaaaagttccaagtcaatga |
7441805 |
T |
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| Q |
330 |
aatgacg----tgttctgttggattattctacaatacttacttaaaacccaagcccatgacaacatctctgct |
398 |
Q |
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| T |
7441806 |
aatgacgtgtttgttctgttggattattctgcaatacttacttaaaatccaagcccatgacaacatctttgct |
7441878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 53 - 163
Target Start/End: Original strand, 7441529 - 7441639
Alignment:
| Q |
53 |
acaagttaacaatatttttgtgtgatcaattcttacttgaacacagcttcaaattcaatctatatgggcaaacatacaaatgtaaaaaattaaaagcgac |
152 |
Q |
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| T |
7441529 |
acaagttaacaatatttttgtgtgttcaattcttacttgaacacagcttcaaatccaatctatatgggcaaacatacaaatgtaaaaaattaaaagcgac |
7441628 |
T |
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| Q |
153 |
atgatttaatt |
163 |
Q |
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| T |
7441629 |
atgatttaatt |
7441639 |
T |
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