View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8651_low_11 (Length: 354)

Name: NF8651_low_11
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8651_low_11
NF8651_low_11
[»] chr1 (4 HSPs)
chr1 (19-88)||(23057149-23057217)
chr1 (19-88)||(23061450-23061518)
chr1 (285-354)||(23056479-23056548)
chr1 (191-246)||(1594855-1594910)
[»] scaffold0855 (1 HSPs)
scaffold0855 (140-266)||(1203-1329)
[»] scaffold0847 (1 HSPs)
scaffold0847 (140-266)||(1368-1494)
[»] chr8 (1 HSPs)
chr8 (185-263)||(9618952-9619029)
[»] chr4 (1 HSPs)
chr4 (174-264)||(4962386-4962476)
[»] chr2 (1 HSPs)
chr2 (192-264)||(20690578-20690650)


Alignment Details
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 23057217 - 23057149
Alignment:
Q  19 agtgaggagtaaagaaaagttcatttgattcattgagataacgtttgtttggatcgtgaatgatgaataa 88  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23057217 agtgaggagtaaagaaaagttcatt-gattcattgagataacgtttgtttggatcgtgaatgatgaataa 23057149  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 23061518 - 23061450
Alignment:
Q  19 agtgaggagtaaagaaaagttcatttgattcattgagataacgtttgtttggatcgtgaatgatgaataa 88  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23061518 agtgaggagtaaagaaaagttcatt-gattcattgagataacgtttgtttggatcgtgaatgatgaataa 23061450  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 285 - 354
Target Start/End: Complemental strand, 23056548 - 23056479
Alignment:
Q  285 ttctctccgctgccacactgcctcctcttgctgttctccaaagccctatctgtctgtatccttgattctc 354  Q
    |||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  23056548 ttctctccgccgccgcactgcctcctcttgttgttctccaaagccctatctgtatgtatccttgattctc 23056479  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 191 - 246
Target Start/End: Complemental strand, 1594910 - 1594855
Alignment:
Q  191 tacttaacctattcaaatagaaattatctagacatagaaagaagaataaataacat 246  Q
    ||||||||||| ||||| |||||||| |||||||  ||||||||||||||||||||    
T  1594910 tacttaacctaatcaaagagaaattagctagacagtgaaagaagaataaataacat 1594855  T

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Target: scaffold0855 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0855
Description:

Target: scaffold0855; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 1203 - 1329
Alignment:
Q  140 aaaggtactcagcaaattacaaggttcaagcaatttacataaaatatcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataa 239  Q
    ||||||||||| ||||||| | |||||||| | |||| |   || ||||| || |||||||| ||||| |||||||  || |||||| | |||| |||||    
T  1203 aaaggtactcaacaaattatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctggacataaagagaaaaataa 1302  T
Q  240 ataacatggagataaaaataaccatga 266  Q
    |||||||||| || |||||||||||||    
T  1303 ataacatggaaattaaaataaccatga 1329  T

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Target: scaffold0847 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0847
Description:

Target: scaffold0847; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 266
Target Start/End: Original strand, 1368 - 1494
Alignment:
Q  140 aaaggtactcagcaaattacaaggttcaagcaatttacataaaatatcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataa 239  Q
    ||||||||||| ||||||| | |||||||| | |||| |   || ||||| || |||||||| ||||| |||||||  || |||||| | |||| |||||    
T  1368 aaaggtactcaacaaattatatggttcaagaagtttatagtgaagatcctttaattaacctaatcaaagagaaatttgctggacataaagagaaaaataa 1467  T
Q  240 ataacatggagataaaaataaccatga 266  Q
    |||||||||| || |||||||||||||    
T  1468 ataacatggaaattaaaataaccatga 1494  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 263
Target Start/End: Original strand, 9618952 - 9619029
Alignment:
Q  185 atcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataaataacatggagataaaaataacca 263  Q
    ||||||||| ||||||| |||||||||||||| ||||| ||||| |||| ||||||||||||||| |  ||||||||||    
T  9618952 atcctctacgtaacctaatcaaatagaaattaactagaaatagagagaa-aataaataacatggaaagtaaaataacca 9619029  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 4962386 - 4962476
Alignment:
Q  174 ttacataaaatatcctctacttaacctattcaaatagaaattatctagacatagaaagaagaataaataacatggagataaaaataaccat 264  Q
    ||||||| || ||| ||||||||||||| ||||  |||| |||  ||||||| || |||||||||||||||||| | |  |||||||||||    
T  4962386 ttacatagaagatcatctacttaacctaatcaaggagaatttagttagacatggagagaagaataaataacatgaaaagtaaaataaccat 4962476  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 264
Target Start/End: Original strand, 20690578 - 20690650
Alignment:
Q  192 acttaacctattcaaatagaaattatctagacatagaaagaagaataaataacatggagataaaaataaccat 264  Q
    |||||||||||||||| | |||||| |||||| |||| |||||||||| ||| || |  || |||||||||||    
T  20690578 acttaacctattcaaagataaattagctagacctagagagaagaataagtaatataggaattaaaataaccat 20690650  T

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