View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8651_low_2 (Length: 575)
Name: NF8651_low_2
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 17 - 564
Target Start/End: Original strand, 278214 - 278757
Alignment:
| Q |
17 |
agtaacctcttccccacaacaagttgcttcaacaacaatccagtaaccacttttgactatatttccatgggtctttccatagattattccaaattcactc |
116 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278214 |
agtaacctcttccccacaacaagttgtttcaacaacaatccagtaaccacttttgactatatttccatgggtctttccatagattattccaaattcactc |
278313 |
T |
|
| Q |
117 |
catgtacaacacaatctgatgaacaagttctagctagcaaaaatttgcaggcccgaaaaacggaacgtgaaatactagtttctgaaccagaagaggataa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278314 |
catgtacaacacaatctgatgaacaagttctagctaacaaaaatttgcaggcccgaaaaacggaacgtgaaatactagtttctgaaccagaagaggataa |
278413 |
T |
|
| Q |
217 |
aaccacaagcaaagaaaattcaggaaaaagatctaggagctcaaatgaggtaacaaacagaagccagaaggcccatgaatcttctaaatgtttcccttac |
316 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
278414 |
aaccacaagcacagaaaattcaggaaaaagatctaggagctcaaatgaggtaacaaacagaag-------gcccatgaatcttctaaatgtctcccttac |
278506 |
T |
|
| Q |
317 |
tactg---ttttttatttcttctttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatt |
413 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
278507 |
tactgctgttttttatttcttctttccaactgatatgcatttccttttccaccacggtttatggtttggattttgattttctgaaattctccttgtcatt |
278606 |
T |
|
| Q |
414 |
tgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctca |
513 |
Q |
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| T |
278607 |
tgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctca |
278706 |
T |
|
| Q |
514 |
ggatcagaacttaagcggttattgttcagaggatgagtccaattcttctca |
564 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
278707 |
ggatcagaccttaagcggttattgttcagaggatgagtccaattcttctca |
278757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 412 - 560
Target Start/End: Complemental strand, 24653551 - 24653403
Alignment:
| Q |
412 |
tttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttct |
511 |
Q |
| |
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|||||| |||||||||| |||||| |||||||||||||||||||||||| || || |||| |||| |||||||| ||||||||||||| |||||||| |
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| T |
24653551 |
tttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttct |
24653452 |
T |
|
| Q |
512 |
caggatcagaacttaagcggttattgttcagaggatgagtccaattctt |
560 |
Q |
| |
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|||||||||| ||||||| || ||||||||| |||| |||||||||| |
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|
| T |
24653451 |
caggatcagaccttaagcaattgttgttcagataatgaatccaattctt |
24653403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 411 - 529
Target Start/End: Complemental strand, 24685277 - 24685159
Alignment:
| Q |
411 |
atttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttc |
510 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||| | ||||| || || |||| || ||||||||| |||||||||||| || ||||||| |
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| T |
24685277 |
atttgattttataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttc |
24685178 |
T |
|
| Q |
511 |
tcaggatcagaacttaagc |
529 |
Q |
| |
|
||| ||||||| ||||||| |
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|
| T |
24685177 |
tcaagatcagaccttaagc |
24685159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 412 - 521
Target Start/End: Complemental strand, 24682535 - 24682423
Alignment:
| Q |
412 |
tttgatattataggtcccaaagaacaagaggaat---gttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggt |
508 |
Q |
| |
|
|||||| |||||||||| |||||| |||||||| |||||||||||||||| || || |||| |||| |||||||| |||||||||||||| ||||| |
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| T |
24682535 |
tttgattttataggtccgaaagaaagagaggaataatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggt |
24682436 |
T |
|
| Q |
509 |
tctcaggatcaga |
521 |
Q |
| |
|
||||||||||||| |
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|
| T |
24682435 |
tctcaggatcaga |
24682423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 281
Target Start/End: Complemental strand, 24685478 - 24685374
Alignment:
| Q |
178 |
ggaacgtgaaatactagtttctgaaccagaagaggataaaaccacaagcaaagaaaattcaggaaaaagatctaggagctcaaatgaggta-acaaacag |
276 |
Q |
| |
|
||||| ||| ||||||||||||| |||| ||| |||||||||| ||||| ||| ||||||||||||||| |||||||||| | ||||||| ||||||| |
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|
| T |
24685478 |
ggaacatgacatactagtttctggaccacgagatgataaaaccagaagcagagagaattcaggaaaaagacctaggagctcgactgaggtagacaaacaa |
24685379 |
T |
|
| Q |
277 |
aagcc |
281 |
Q |
| |
|
||||| |
|
|
| T |
24685378 |
aagcc |
24685374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 528
Target Start/End: Complemental strand, 24631957 - 24631760
Alignment:
| Q |
329 |
tttcttct-ttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtc |
427 |
Q |
| |
|
|||||||| |||||| ||||||| ||||| ||||||| ||| |||||||| || ||| |||||| ||| ||| ||| || ||||||| |||| ||| |
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| T |
24631957 |
tttcttctcttccaagtgatatggatttctttttccaacacaatttatggtctgt-tttcgattttgtgagattatcccggttatttgattttattagtc |
24631859 |
T |
|
| Q |
428 |
ccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaa |
527 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| || || | || |||||||| ||| |||| ||||||||| ||||||| | |||||||| ||||| |
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|
| T |
24631858 |
ccaaagaacaagaggaa--ttaaatgtatgaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaa |
24631761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 102 - 268
Target Start/End: Complemental strand, 41800363 - 41800197
Alignment:
| Q |
102 |
attccaaattcactccatgtacaacacaatctgatgaa--caagttctagctagcaaaaatttgcaggcccgaaaaacggaacgtgaaatactagtttct |
199 |
Q |
| |
|
|||||||||||||||||| |||||| || | || || |||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||| |
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| T |
41800363 |
attccaaattcactccatatacaaccgaacccgacgagagcaagttctagctgccaagaatttgcaggcccaaaa---ggaacgtgaaatactagtttct |
41800267 |
T |
|
| Q |
200 |
gaaccagaagaggataaaaccacaagcaaagaaaattcagga-aaaagatctaggagctcaaatgaggta |
268 |
Q |
| |
|
|||| |||||| |||||||| | ||||| ||||||||||||| ||||||| |||||||||||| |||||| |
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|
| T |
41800266 |
gaactagaagaagataaaacaagaagcacagaaaattcaggaaaaaagatgtaggagctcaaacgaggta |
41800197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 348 - 520
Target Start/End: Complemental strand, 41806256 - 41806086
Alignment:
| Q |
348 |
atgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgt |
447 |
Q |
| |
|
|||||||||||||||| || |||||||||||| ||| |||||| ||| ||| ||| ||| ||||||| ||||||||||| ||||||||| ||||| |
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|
| T |
41806256 |
atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagag-aatgt |
41806159 |
T |
|
| Q |
448 |
taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
520 |
Q |
| |
|
||| ||||| |||| | || | ||||||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
41806158 |
taactgtagaaagaatgtaagacgggcttctataagcactgaagagaatacacgtcctggttctcagcatcag |
41806086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 470 - 521
Target Start/End: Complemental strand, 41800031 - 41799980
Alignment:
| Q |
470 |
tgtgcttctataagcactgaagagaatacaagtactggttctcaggatcaga |
521 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
41800031 |
tgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcaga |
41799980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 447
Target Start/End: Complemental strand, 41800138 - 41800036
Alignment:
| Q |
344 |
tgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagagga |
443 |
Q |
| |
|
|||| ||||||||||||||| ||| |||||||||||| ||| |||||| | | ||| ||| || ||||||| ||||||||||| ||||||||| ||| |
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|
| T |
41800138 |
tgatgtgcatttccttttcctgcacagtttatggtttgtgttt-gattttgttagattctcctggttatttgattttataggtcccgaagaacaagggga |
41800040 |
T |
|
| Q |
444 |
atgt |
447 |
Q |
| |
|
|||| |
|
|
| T |
41800039 |
atgt |
41800036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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