View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8651_low_20 (Length: 276)

Name: NF8651_low_20
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8651_low_20
NF8651_low_20
[»] chr5 (4 HSPs)
chr5 (4-275)||(39674874-39675145)
chr5 (136-196)||(15210794-15210854)
chr5 (113-197)||(18175207-18175291)
chr5 (165-197)||(31802255-31802287)
[»] chr2 (2 HSPs)
chr2 (117-196)||(5164813-5164892)
chr2 (105-197)||(23405199-23405291)
[»] chr1 (3 HSPs)
chr1 (138-191)||(4865830-4865883)
chr1 (152-186)||(40800284-40800318)
chr1 (152-197)||(48607771-48607816)
[»] chr8 (2 HSPs)
chr8 (139-198)||(32648313-32648372)
chr8 (157-198)||(4230554-4230595)
[»] chr6 (3 HSPs)
chr6 (108-170)||(3037595-3037658)
chr6 (139-197)||(33697122-33697180)
chr6 (158-198)||(28957108-28957148)
[»] chr4 (3 HSPs)
chr4 (154-192)||(32866976-32867014)
chr4 (155-200)||(49233814-49233859)
chr4 (152-197)||(50376671-50376716)
[»] chr7 (4 HSPs)
chr7 (110-198)||(1798143-1798229)
chr7 (157-197)||(3948054-3948094)
chr7 (146-198)||(18677026-18677078)
chr7 (155-199)||(35644436-35644480)


Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 275
Target Start/End: Original strand, 39674874 - 39675145
Alignment:
Q  4 agtaattgtatcatccgaatctagtttagtaataaaattgaattaccatgcatgctattaaatttatttcagttacccnnnnnnncctttcaaataactt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  39674874 agtaattgtatcatccgaatctagtttagtaataaaattgaattaccatgcatgctattaaatttatttcagttaccctttttttcctttcaaataactt 39674973  T
Q  104 aacctttttaagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcacaatttt 203  Q
    ||| ||||||||||||||||||||||||||| ||||||||||  |  | | |||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  39674974 aacatttttaagatgaataagtgagttatctggagttcgaacctcagttcttacatatataatgcaacgtctcaaccaattgagttaaactcacaatttt 39675073  T
Q  204 agtgtgtgagcttatgtaaacatggatacaatgtgttgtacaatttagaatgaaaaactcacgctaatagac 275  Q
    ||||||||| ||||| |||| || |||||||||||||||||||||| |||||||||||||||||||||||||    
T  39675074 agtgtgtgaacttatttaaaaatagatacaatgtgttgtacaatttcgaatgaaaaactcacgctaatagac 39675145  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 15210854 - 15210794
Alignment:
Q  136 gagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactca 196  Q
    |||||| ||| ||||||||| |||| |  |||||||||  |||||||||||||||||||||    
T  15210854 gagttcaaaccccgatccctgcatagaatatgcaacgttcctatcaactgagttaaactca 15210794  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 197
Target Start/End: Complemental strand, 18175291 - 18175207
Alignment:
Q  113 aagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 197  Q
    |||||||||||||| | | ||| | |||||||| |||| |||||||||||  |||||||||| ||  |||| ||||||| |||||    
T  18175291 aagatgaataagtgggatgtctggggttcgaaccccgacccctacatataatatgcaacgtccctgacaaccgagttaagctcac 18175207  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 31802255 - 31802287
Alignment:
Q  165 atgcaacgtctctatcaactgagttaaactcac 197  Q
    ||||| |||||||||||||||||||||||||||    
T  31802255 atgcatcgtctctatcaactgagttaaactcac 31802287  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 196
Target Start/End: Complemental strand, 5164892 - 5164813
Alignment:
Q  117 tgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactca 196  Q
    |||||||||||| | |||   ||||||| ||||| |||||||||||||||||||  |||||||||||| |||||||||||    
T  5164892 tgaataagtgagatgtctaaggttcgaattccgacccctacatatataatgcaatatctctatcaactaagttaaactca 5164813  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 197
Target Start/End: Complemental strand, 23405291 - 23405199
Alignment:
Q  105 acctttttaagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 197  Q
    ||||||||||| |||||||||| | | ||  | |||||||| |||| |||| ||||||| |||||| ||| ||| |||||||| ||| |||||    
T  23405291 acctttttaaggtgaataagtggggtgtccagggttcgaaccccgacccctgcatatattatgcaatgtccctaccaactgagctaagctcac 23405199  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 191
Target Start/End: Original strand, 4865830 - 4865883
Alignment:
Q  138 gttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaa 191  Q
    ||||||||||||| |||||||||||| |||||| ||| ||| ||||||||||||    
T  4865830 gttcgaactccgacccctacatatattatgcaatgtccctaccaactgagttaa 4865883  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 40800284 - 40800318
Alignment:
Q  152 ccctacatatataatgcaacgtctctatcaactga 186  Q
    ||||||||||||||||||| |||||||||||||||    
T  40800284 ccctacatatataatgcaatgtctctatcaactga 40800318  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 48607771 - 48607816
Alignment:
Q  152 ccctacatatataatgcaacgtctctatcaactgagttaaactcac 197  Q
    ||||||||||| |||||||  || ||||||||||||||||||||||    
T  48607771 ccctacatataaaatgcaatatccctatcaactgagttaaactcac 48607816  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 32648313 - 32648372
Alignment:
Q  139 ttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 198  Q
    ||||||| |||||| |||||||||| || ||||||||| | ||| |||||||||||||||    
T  32648313 ttcgaaccccgatctctacatatattatacaacgtctcaaacaattgagttaaactcaca 32648372  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 198
Target Start/End: Complemental strand, 4230595 - 4230554
Alignment:
Q  157 catatataatgcaacgtctctatcaactgagttaaactcaca 198  Q
    |||||||||||||| |||| ||||||| ||||||||||||||    
T  4230595 catatataatgcaatgtctttatcaacagagttaaactcaca 4230554  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 3037595 - 3037658
Alignment:
Q  108 tttttaagatgaataagtgagttatcttgagttcgaactccgatccctacatat-ataatgcaa 170  Q
    ||||||||||||||||||| ||| |||  ||||||||| ||| ||||||||||| |||||||||    
T  3037595 tttttaagatgaataagtgggttgtctgaagttcgaacaccgctccctacatatcataatgcaa 3037658  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 33697122 - 33697180
Alignment:
Q  139 ttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcac 197  Q
    |||||||||||| |||| |||||| |||||||  || |||||||||||||||| |||||    
T  33697122 ttcgaactccgacccctgcatataaaatgcaatatccctatcaactgagttaagctcac 33697180  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 28957148 - 28957108
Alignment:
Q  158 atatataatgcaacgtctctatcaactgagttaaactcaca 198  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  28957148 atatattatgcaatgtctttatcaactgagttaaactcaca 28957108  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 32867014 - 32866976
Alignment:
Q  154 ctacatatataatgcaacgtctctatcaactgagttaaa 192  Q
    |||||||||| |||||||||||||||||| |||||||||    
T  32867014 ctacatatattatgcaacgtctctatcaattgagttaaa 32866976  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 49233814 - 49233859
Alignment:
Q  155 tacatatataatgcaacgtctctatcaactgagttaaactcacaat 200  Q
    ||||||||| |||||  ||||||||||||||||||||||| |||||    
T  49233814 tacatatattatgcattgtctctatcaactgagttaaacttacaat 49233859  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 197
Target Start/End: Original strand, 50376671 - 50376716
Alignment:
Q  152 ccctacatatataatgcaacgtctctatcaactgagttaaactcac 197  Q
    |||| ||||||| |||||| ||||||| ||||||||||||||||||    
T  50376671 ccctgcatatattatgcaatgtctctaccaactgagttaaactcac 50376716  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 1798229 - 1798143
Alignment:
Q  110 tttaagatgaataagtgagttatcttgagttcgaactccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 198  Q
    |||||||||||||||||||  |||  || |||||||||||| || |||||||||||| ||| |||||||| |  ||||||| |||||||    
T  1798229 tttaagatgaataagtgaggaatcagga-ttcgaactccga-ccttacatatataatacaatgtctctattagttgagttatactcaca 1798143  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 3948094 - 3948054
Alignment:
Q  157 catatataatgcaacgtctctatcaactgagttaaactcac 197  Q
    ||||||| |||||  ||||||||||||||||||||||||||    
T  3948094 catatattatgcattgtctctatcaactgagttaaactcac 3948054  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 18677078 - 18677026
Alignment:
Q  146 tccgatccctacatatataatgcaacgtctctatcaactgagttaaactcaca 198  Q
    |||||||||| ||||||  ||||||||||  || |||||||||||||||||||    
T  18677078 tccgatccctgcatataatatgcaacgtccataccaactgagttaaactcaca 18677026  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 35644480 - 35644436
Alignment:
Q  155 tacatatataatgcaacgtctctatcaactgagttaaactcacaa 199  Q
    ||||||||||||| || || |||| ||||||||||||||||||||    
T  35644480 tacatatataatgtaatgtttctaacaactgagttaaactcacaa 35644436  T

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