View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8651_low_22 (Length: 268)

Name: NF8651_low_22
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8651_low_22
NF8651_low_22
[»] chr2 (1 HSPs)
chr2 (19-79)||(44253232-44253292)
[»] chr5 (1 HSPs)
chr5 (19-56)||(376618-376655)
[»] chr3 (4 HSPs)
chr3 (34-79)||(53341088-53341133)
chr3 (34-79)||(37418272-37418317)
chr3 (34-79)||(53058998-53059043)
chr3 (34-79)||(53067931-53067976)
[»] chr7 (1 HSPs)
chr7 (35-80)||(31013701-31013746)
[»] chr1 (1 HSPs)
chr1 (25-79)||(16164692-16164746)
[»] chr4 (1 HSPs)
chr4 (206-250)||(56164691-56164735)


Alignment Details
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 44253232 - 44253292
Alignment:
Q  19 caacagaagatatgattagctcccttccagactcaattatctctcacattctctcttttct 79  Q
    |||| ||||||| |||||||||| ||||||| |||||||| ||||||||||||||||||||    
T  44253232 caaccgaagataggattagctcctttccagattcaattatatctcacattctctcttttct 44253292  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 376655 - 376618
Alignment:
Q  19 caacagaagatatgattagctcccttccagactcaatt 56  Q
    ||||||||||||||||||||||||||||||||||||||    
T  376655 caacagaagatatgattagctcccttccagactcaatt 376618  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 53341133 - 53341088
Alignment:
Q  34 ttagctcccttccagactcaattatctctcacattctctcttttct 79  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||    
T  53341133 ttagctcccttccagactcaattatctgtcacattctctcctttct 53341088  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 37418272 - 37418317
Alignment:
Q  34 ttagctcccttccagactcaattatctctcacattctctcttttct 79  Q
    ||||||||||||||||||||||||||| ||| |||||||| |||||    
T  37418272 ttagctcccttccagactcaattatctgtcatattctctcctttct 37418317  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 53058998 - 53059043
Alignment:
Q  34 ttagctcccttccagactcaattatctctcacattctctcttttct 79  Q
    ||||||||||||| ||||||||||||| |||||||||||| |||||    
T  53058998 ttagctcccttccggactcaattatctgtcacattctctcctttct 53059043  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 53067931 - 53067976
Alignment:
Q  34 ttagctcccttccagactcaattatctctcacattctctcttttct 79  Q
    ||||||||||||| ||||| ||||||| |||||||||||| |||||    
T  53067931 ttagctcccttccggactcgattatctatcacattctctcctttct 53067976  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 31013701 - 31013746
Alignment:
Q  35 tagctcccttccagactcaattatctctcacattctctcttttcta 80  Q
    |||||||||||| ||||||||||||| |||||||||||| ||||||    
T  31013701 tagctcccttccggactcaattatctgtcacattctctcctttcta 31013746  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 16164746 - 16164692
Alignment:
Q  25 aagatatgattagctcccttccagactcaattatctctcacattctctcttttct 79  Q
    |||| ||||||||| ||||||||||||||||| | ||||||||  ||||||||||    
T  16164746 aagacatgattagcacccttccagactcaattctgtctcacataatctcttttct 16164692  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 56164691 - 56164735
Alignment:
Q  206 attaacgcagctatacaaagaagaattgaaaacctagactttgac 250  Q
    ||||| ||||| ||||||||| ||||||||||||||||| |||||    
T  56164691 attaatgcagcaatacaaagaggaattgaaaacctagacattgac 56164735  T

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