View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_low_23 (Length: 254)
Name: NF8651_low_23
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 29253544 - 29253321
Alignment:
| Q |
18 |
tttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatatataacttcaatagttggttttcttgtgaacaccagggca |
117 |
Q |
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| T |
29253544 |
tttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatatataacttcaatagttggttttcttgtgaacaccgaggca |
29253445 |
T |
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| Q |
118 |
ccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatgcag |
217 |
Q |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29253444 |
ccacttcttgcaaatgtgcatccgtacttcgcttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatgcag |
29253345 |
T |
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| Q |
218 |
ttggttatcaaaacctctttgatg |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
29253344 |
ttggttatcaaaacctctttgatg |
29253321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 29225696 - 29225822
Alignment:
| Q |
115 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
214 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||| | ||||||||||| ||||||||||||||||| |
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| T |
29225696 |
gcaccacttcttgctaatgtgtatccgtacttcgcttatattggtgataaggtaaacattcctcttgactatgctctttttagacaacaaggaaacaatg |
29225795 |
T |
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| Q |
215 |
cagttggttatcaaaacctctttgatg |
241 |
Q |
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| T |
29225796 |
cagttggttaccaaaacctctttgatg |
29225822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 29240872 - 29240998
Alignment:
| Q |
115 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
214 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||| || |||| |||| ||||||| | ||||||||||||||||||||||||||||| |
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| T |
29240872 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatatcggtaataagcaaagcatttctcttgactatgctctttttaaacaacaaggaaacaatg |
29240971 |
T |
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| Q |
215 |
cagttggttatcaaaacctctttgatg |
241 |
Q |
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||||| || |||||||||||||||| |
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| T |
29240972 |
atgttgggtaccaaaacctctttgatg |
29240998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 115 - 241
Target Start/End: Original strand, 29230360 - 29230486
Alignment:
| Q |
115 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
214 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||| | || ||||| |||| ||||||||| ||||||||||| |||||||||||||||| |
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| T |
29230360 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatatcaataataaacaaagcatttctcttgattatgctctttttagacaacaaggaaacaatc |
29230459 |
T |
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| Q |
215 |
cagttggttatcaaaacctctttgatg |
241 |
Q |
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||||||||| | |||||| ||||||| |
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| T |
29230460 |
aagttggttaccgaaacctttttgatg |
29230486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 29251146 - 29251252
Alignment:
| Q |
115 |
gcaccacttcttgcaaatgtgtatccgtacttcacttatatcggtgatccacaaaacattcctcttgattttgctctttttaaacaacaaggaaacaatg |
214 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||| ||| || ||||| |||| ||||||| | || |||||||||||||||||||||||||| |
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| T |
29251146 |
gcaccacttcttgccaatgtgtatccgtacttcgcttatattggtaataaacaaagcatttctcttgactatgttctttttaaacaacaaggaaacaatg |
29251245 |
T |
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| Q |
215 |
cagttgg |
221 |
Q |
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|||||| |
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| T |
29251246 |
aagttgg |
29251252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 29288350 - 29288426
Alignment:
| Q |
17 |
atttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatatataacttcaatagtt |
93 |
Q |
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||||||| ||||| || |||||||||||| ||||| ||||||| |||| ||||| ||||||||| | |||||||| |
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| T |
29288350 |
atttgttaggaagttcatatcctccatcacaaggagtatttagtccttcttcaatttcatatataattccaatagtt |
29288426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 138
Target Start/End: Complemental strand, 21287145 - 21287024
Alignment:
| Q |
17 |
atttgttgggaagctcgtatcctccatcagcaggagcatttagtgcttccgcaattccatatataacttcaatagttggttttcttgtgaacaccagggc |
116 |
Q |
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||||||||||||| || |||||||||||| |||| |||||||| |||| | ||| |||||||||| |||| ||| |||||||||| | | ||| |
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| T |
21287145 |
atttgttgggaagttcctatcctccatcatcaggtgcatttagcacttcttccattttatatataactccaattgttaattttcttgtggagaatgaggc |
21287046 |
T |
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| Q |
117 |
accacttcttgcaaatgtgtat |
138 |
Q |
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|||||||||||||||||||||| |
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| T |
21287045 |
accacttcttgcaaatgtgtat |
21287024 |
T |
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