View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_low_24 (Length: 246)
Name: NF8651_low_24
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_24 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 246
Target Start/End: Complemental strand, 43312822 - 43312590
Alignment:
| Q |
14 |
gacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagnnnnnnnnagttgttgtttaggatgaaga |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43312822 |
gacatcattcgcaagtatggatttctatctatactgatatatactttgtgcttcttgttgatcgaaaatagttttttttagttgttgtttaggatgaaga |
43312723 |
T |
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| Q |
114 |
aactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtctccgtgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43312722 |
aactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgtctccgtgt |
43312623 |
T |
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| Q |
214 |
aaccgtcttggtcatcaagtttccaaacagtcc |
246 |
Q |
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| T |
43312622 |
aaccgtcttggtcatcaagtttccaaacagtcc |
43312590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 39486411 - 39486536
Alignment:
| Q |
106 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt |
205 |
Q |
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| T |
39486411 |
gatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgataaccgt |
39486510 |
T |
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| Q |
206 |
ctccgtgtaaccgtcttggtcatcaa |
231 |
Q |
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| T |
39486511 |
ctccgaataaccatcttggtcatcaa |
39486536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 210
Target Start/End: Original strand, 39454592 - 39454695
Alignment:
| Q |
107 |
atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc |
206 |
Q |
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| T |
39454592 |
atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc |
39454691 |
T |
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| Q |
207 |
tccg |
210 |
Q |
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|||| |
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| T |
39454692 |
tccg |
39454695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 104 - 228
Target Start/End: Original strand, 39480323 - 39480447
Alignment:
| Q |
104 |
aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc |
203 |
Q |
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| T |
39480323 |
aggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaagcttctaatcaaccgtgataacc |
39480422 |
T |
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| Q |
204 |
gtctccgtgtaaccgtcttggtcat |
228 |
Q |
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||||||| |||| || |||||||| |
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| T |
39480423 |
gtctccgaataactgttttggtcat |
39480447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 39450952 - 39451062
Alignment:
| Q |
106 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt |
205 |
Q |
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|||||||||| |||||||||||||||||||| ||| |||||| | ||| |||| ||||||||||| || || |||||||| |||| |||||||||||| |
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| T |
39450952 |
gatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataaccgt |
39451051 |
T |
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| Q |
206 |
ctccgtgtaac |
216 |
Q |
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| T |
39451052 |
ctccgagtaac |
39451062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 104 - 238
Target Start/End: Complemental strand, 39458513 - 39458379
Alignment:
| Q |
104 |
aggatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataacc |
203 |
Q |
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|||||||||||| |||||||||| ||||| |||| || ||||| || ||| |||| |||||||| || ||||| |||||||| ||||||||||||||| |
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| T |
39458513 |
aggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaagcttctaatcaaccgtgataacc |
39458414 |
T |
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| Q |
204 |
gtctccgtgtaaccgtcttggtcatcaagtttcca |
238 |
Q |
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| T |
39458413 |
gtctccgaataactatcttggtcatgaaatttcca |
39458379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 39464750 - 39464626
Alignment:
| Q |
107 |
atgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgtc |
206 |
Q |
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||||||||| |||||| ||||||||||||| ||| | ||| || ||| |||| || ||||||||||||| |||||||| |||||||||||||||||| |
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| T |
39464750 |
atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc |
39464651 |
T |
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| Q |
207 |
tccgtgtaaccgtcttggtcatcaa |
231 |
Q |
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|||| ||||| |||| |||||||| |
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| T |
39464650 |
tccgaataaccatcttagtcatcaa |
39464626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 216
Target Start/End: Original strand, 39475458 - 39475568
Alignment:
| Q |
106 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt |
205 |
Q |
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|||||||||| |||||||||||||||||||| ||| ||| || | ||| || | ||||| |||||||||| |||||||| |||| |||||||||||| |
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| T |
39475458 |
gatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgt |
39475557 |
T |
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| Q |
206 |
ctccgtgtaac |
216 |
Q |
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||||| ||||| |
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| T |
39475558 |
ctccgagtaac |
39475568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 39471988 - 39472092
Alignment:
| Q |
106 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt |
205 |
Q |
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|||||||||| ||||||||||||| |||||| ||| | || ||| ||| |||| || | || |||||||| |||||||| ||||||||||||||||| |
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| T |
39471988 |
gatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgataaccgt |
39472087 |
T |
|
| Q |
206 |
ctccg |
210 |
Q |
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||||| |
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| T |
39472088 |
ctccg |
39472092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 39460202 - 39460306
Alignment:
| Q |
106 |
gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcgtcaaccgtgataaccgt |
205 |
Q |
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|||||||||| |||||| ||||||||||||| ||| ||| | | ||| ||| |||||||||||||| || |||||||| |||||||||||| || |
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| T |
39460202 |
gatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgataagcgc |
39460301 |
T |
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| Q |
206 |
ctccg |
210 |
Q |
| |
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||||| |
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| T |
39460302 |
ctccg |
39460306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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