View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8651_low_25 (Length: 246)
Name: NF8651_low_25
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 43312611 - 43312380
Alignment:
| Q |
1 |
tcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaactactcatgttccctccac |
100 |
Q |
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| T |
43312611 |
tcatcaagtttccaaacagtcctgcagaaaccctttcctcctctgactcagaaaatctccatgtcattaacctccctgaaaccactcatgttccctccac |
43312512 |
T |
|
| Q |
101 |
ctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcgctgccttcgtt |
200 |
Q |
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| T |
43312511 |
ctccaacgtaggtagctctgtagctgctcttgttgaaacccaaaaggccaatgttaaagaagctgtttcaaatatcactggaaagctcgctgccttcgtt |
43312412 |
T |
|
| Q |
201 |
gttgacatgttctgcaccaccatgattgatgt |
232 |
Q |
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| T |
43312411 |
gttgacatgttctgcaccaccatgattgatgt |
43312380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 39483546 - 39483586
Alignment:
| Q |
192 |
gccttcgttgttgacatgttctgcaccaccatgattgatgt |
232 |
Q |
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| T |
39483546 |
gccttcgttgttgacatgttctgcaccaccatgattgatgt |
39483586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 39486754 - 39486792
Alignment:
| Q |
192 |
gccttcgttgttgacatgttctgcaccaccatgattgat |
230 |
Q |
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| T |
39486754 |
gccttcgttgttgacatgttctgcaccaccatgattgat |
39486792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 39475789 - 39475829
Alignment:
| Q |
186 |
ctcgctgccttcgttgttgacatgttctgcaccaccatgat |
226 |
Q |
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| T |
39475789 |
ctcgccgccttcgttgttgacatgttctgcaccaccatgat |
39475829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Complemental strand, 39458183 - 39458140
Alignment:
| Q |
189 |
gctgccttcgttgttgacatgttctgcaccaccatgattgatgt |
232 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||| |
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| T |
39458183 |
gctgcattcattgttgacatgttctgcaccaccatgattgatgt |
39458140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 39464440 - 39464401
Alignment:
| Q |
193 |
ccttcgttgttgacatgttctgcaccaccatgattgatgt |
232 |
Q |
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| T |
39464440 |
ccttcgttgttgacatgttctgcaccaacatgattgatgt |
39464401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 39451293 - 39451327
Alignment:
| Q |
196 |
tcgttgttgacatgttctgcaccaccatgattgat |
230 |
Q |
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| T |
39451293 |
tcgttgttgacatgttctgcaccaccatgattgat |
39451327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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