View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8651_low_27 (Length: 239)
Name: NF8651_low_27
Description: NF8651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8651_low_27 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 45975668 - 45975430
Alignment:
| Q |
1 |
cagatacggattcatccccagtatgttgtaaaatccatcacttatcttatccgtatacgacaagcacccactcacctgataaccaaaaatggcatattta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45975668 |
cagatacggattcatccccagtatgttgtaaaatccatcacttatcttatccgtatatgacaagcacccactcacctgataaccaaaaatggcatattta |
45975569 |
T |
|
| Q |
101 |
atcacacaaatattattgaacgctagttgcaatatggttttaagttgttatctgaagctgcttcaactgcaatataaaagattttgagatctctgcaacc |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45975568 |
atcacacaaatattaatgaacgctagttgcaatatggttttaagttgttatctgcagctgcttcaactgcaatataaaagattttgagatctctgcaacc |
45975469 |
T |
|
| Q |
201 |
acatggcatttgtaaatttgattgcatcagcaatgtttt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
45975468 |
acatggcatttgtaaatttgattgcatcaacaatgtttt |
45975430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University